Treponema pallidum Fribourg-Blanc: TPFB_0394
Help
Entry
TPFB_0394 CDS
T02651
Symbol
topA
Name
(GenBank) DNA topoisomerase TopA
KO
K03168
DNA topoisomerase I [EC:
5.6.2.1
]
Organism
tpb
Treponema pallidum Fribourg-Blanc
Brite
KEGG Orthology (KO) [BR:
tpb00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
tpb03032
]
TPFB_0394 (topA)
03400 DNA repair and recombination proteins [BR:
tpb03400
]
TPFB_0394 (topA)
Enzymes [BR:
tpb01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.1 DNA topoisomerase
TPFB_0394 (topA)
DNA replication proteins [BR:
tpb03032
]
Prokaryotic type
DNA Topoisomerases
TPFB_0394 (topA)
DNA repair and recombination proteins [BR:
tpb03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
TPFB_0394 (topA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Topoisom_bac
Zn_ribbon_Top1
Toprim
Toprim_4
DUF2996
Romo1
Toprim_2
Motif
Other DBs
NCBI-ProteinID:
AGK84040
LinkDB
All DBs
Position
420302..422497
Genome browser
AA seq
731 aa
AA seq
DB search
MEVRGLQPKRQKTFARKHLVIVESPAKAQTIEKYLGTQYVVRASMGHVIDLPKSRLAIDI
EHDFQPEYITVRGRAQCLKELRTLSKQSLQVFLASDRDREGEAIAYHLAQSIQAYCDTPI
KRIVFNEITPHAIRAAIGHPVPIDTAKVNAQKARRVLDRLVGYHLCPLLWHKVKNGLSAG
RVQSVALRLICEREVEVKRFVPEEYWTVEGTFEKDKKSFSALLILIQGKKAVFKSKQEAT
SSIGLFSQSEARVSQIRSFEKNVRPKQPFTTSTLQQCAANRLGFTSRKTMQVAQQLYEGV
SLGTHRVGLITYMRTDSVRVSEAAVKEVRAWIATHFSDALPGTPNRYAAKGKSQDAHEAI
RPTYVAHTPERIKAHLTRDQIRLYTLIWERFVASQMTDARVRSLTFEITAGPAVFSATET
QVIEQGFYRVLKMLSPKDLSKAVLPPTKEGEVVALHNVQSVQHFTQGPVRYTDASIVKML
EEKGIGRPSTYAPTISVLLDRYYVTRIQKQLMPTPLGKVISDLLTTYFHDVVDVSFTARM
ESKLDEVEEDKIKWNCVIADFYPAFSEKVSTVMKDLNSMRGVFDEKTDVVCSQCGDTMVK
KLGRFGFFLACGKFPECRNTQPVPLAKCPRPACDGNIVGKKTRGRKEFYGCTRFPVCDFV
THFKPTSAVCPQCRCFLVEKSNRRVGTYTACVNPECRYVSPTRKNLSLGKEAVLDGSHRG
AQDKGAVQHYE
NT seq
2196 nt
NT seq
+upstream
nt +downstream
nt
atggaagtgcgtgggctacaaccgaaaaggcagaagacatttgcgcggaagcatttggtt
attgtggaatctcctgcgaaggcgcagaccatcgaaaaatatctgggaacgcagtacgtg
gtgcgagcgtccatgggccacgttattgacttgccaaagtctcgtttagctattgatatt
gagcacgatttccagcctgagtacattacagttcgtggtcgtgcgcagtgtttaaaagag
ttgcgcaccctatctaagcagtcactgcaagtgtttcttgccagcgatcgtgaccgagag
ggggaggcgattgcgtaccaccttgcacagtctatccaggcgtattgtgatacgccgatc
aaaaggatcgtgtttaatgaaattacaccgcacgcgattagggcggcaattggccatccg
gttccaatagataccgcaaaggtcaatgcacaaaaggcgcggcgcgtactggaccgtttg
gtaggataccacctatgtccgctcctgtggcataaggtgaaaaacgggttgtctgcagga
cgtgtgcagtcggttgcacttcgtcttatctgtgaacgagaagttgaagtaaagcgcttt
gttccagaagaatactggacggttgaaggaacgtttgaaaaggataaaaagtcattttct
gcactactgatactgattcaagggaaaaaggctgtattcaaaagcaaacaggaggctaca
agctctatcggtcttttttctcagagtgaggcacgagtttctcaaatacgcagttttgaa
aaaaatgttcgaccgaagcagccctttactacctctacgttgcagcaatgcgctgccaat
aggctcgggtttacctcgcgtaaaacgatgcaggttgcgcagcagctctatgaaggcgta
tctcttggtacccaccgtgtggggctcattacatatatgcgtacagattcggtgcgcgtt
tctgaagctgctgtaaaggaagtgcgcgcgtggatagcaacgcatttttctgacgcactg
ccgggtactcccaatcggtacgctgcaaagggaaagtctcaggacgcacatgaggcgatt
cgaccaacatatgttgcccacactcctgagcggattaaagcgcaccttacgcgtgatcaa
atacgtctgtacacgttgatttgggagcgttttgttgcaagtcagatgacagatgcaaga
gtgcgcagtttgacgtttgaaattaccgctggcccggcggttttcagtgcaactgaaacg
caggttattgaacagggattctaccgtgtactgaaaatgttatcccccaaagatctctct
aaagctgtacttccccctacgaaggaaggtgaggtagttgcactacataacgtgcagtcc
gtacagcactttacgcagggtcctgttcggtacacggatgcaagtatcgtaaaaatgttg
gaggaaaagggaattgggcgcccttcaacgtatgcaccgactatttcagtactgctggat
cgctattatgtaactcgtattcaaaaacagctaatgccgaccccattgggaaaggtcatt
agtgatcttctcaccacctattttcatgatgttgttgatgtaagttttaccgcgcgcatg
gaaagtaaactcgatgaggtggaggaagataaaatcaagtggaattgtgtcattgcggat
ttctatcctgctttcagcgaaaaggtttcaacggtgatgaaagatcttaacagcatgcgc
ggtgtgttcgatgagaaaacagatgtggtgtgtagtcagtgtggtgatacgatggtgaaa
aaactgggcaggtttggatttttccttgcatgcggaaagtttcctgagtgtagaaatact
cagcctgtccctcttgcaaagtgtccgcgtcctgcgtgcgatgggaatatcgtggggaaa
aaaacaaggggaagaaaggaattctatggctgcacgcgtttccctgtctgcgattttgtc
actcactttaaaccgacctctgcagtgtgtcctcagtgtcgatgctttttggttgaaaaa
tcaaatcgcagagtcggcacatatactgcgtgtgtgaaccctgagtgtcggtatgtatct
cctactcgaaaaaatctttctctgggaaaggaagctgtcttggatggtagccacaggggg
gcacaggataaaggagcggtgcaacattatgagtaa
DBGET
integrated database retrieval system
