Treponema pallidum Fribourg-Blanc: TPFB_0493
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Entry
TPFB_0493 CDS
T02651
Symbol
rpoD
Name
(GenBank) DNA-directed RNA polymerase sigma subunit RpoD
KO
K03086
RNA polymerase primary sigma factor
Organism
tpb
Treponema pallidum Fribourg-Blanc
Pathway
tpb02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
tpb00001
]
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
TPFB_0493 (rpoD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
tpb03021
]
TPFB_0493 (rpoD)
Transcription machinery [BR:
tpb03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
TPFB_0493 (rpoD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_r3
Sigma70_r2
Sigma70_r4
Sigma70_r1_2
Sigma70_r1_1
Exonuc_VII_L
Terminase_4
SYF2
DUF7211
Sigma70_r4_2
Motif
Other DBs
NCBI-ProteinID:
AGK84137
LinkDB
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Position
530174..532009
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AA seq
611 aa
AA seq
DB search
MMELSRTPAVMRLLEYAREKKAITHDEVENILAHYGVETEELLHDVLDMLEQENIKVFSS
EEEELEDEVFAGLKGPAADDGDGSFPLSTERVRDKLCDSSRGARQNLLSNARNIALDDPV
KLYLRDIGQEKLLTAEQEVMLSKRMEEGEGIIKDIITQSGLLLPEFYHIGRSLSKKALAV
LDPAESGRTRKEISEEMADRRRLKQAYGEVLRSLYPEMRHYMAMKKRLDERGEPVTVLSS
DEEVCKQRDKLLSCLQKVDLQLEEIDRFSRKFLDTARKIREYKRRKDRHEKQLMIADLCD
MRKIGRGLAVPRQRAKLEETLGMSADCIQEIYTQIQKVTRRLRRIEYDFENTIDGILSMA
RAIHRGHVMLKKAKDKLINANLRLVVSIAKKYTNRGLLFFDLVQEGNIGLIKAVEKFEYR
KGYKFSTYATWWIRQAITRSISDQARTIRVPVHMIEQINKVTRESRQLLQKFGREPSDEE
IAQQLCWTVEKVKQVKSVAREPISLETPIGEEEDSSLGDFVPDADVENPSRVTERVLLKE
EVRSILSALPAREHEVLRMRFGLDGDYSQTLEEVGLYFDVTRERIRQIEAKALKRLRHPR
HSRRLKDFLDS
NT seq
1836 nt
NT seq
+upstream
nt +downstream
nt
atgatggagctgtcacgtactcctgcggtgatgcgcctgttagaatatgcgagggagaag
aaggctataacgcatgatgaggtcgagaacatactcgcgcactatggcgttgagacagaa
gagctgctacatgatgtgcttgatatgcttgagcaggagaatataaaggtcttctcctct
gaagaggaggagctagaagacgaagtctttgcagggctgaaaggacctgccgcggacgat
ggcgatgggtcgttccccctttcaactgagcgcgtgcgtgataagctgtgcgacagtagc
cgtggggcacggcagaacttgctgtcaaacgcgcggaatattgcacttgacgatccggtg
aaactctatctgcgtgatatcggccaagaaaagttgctcactgcggagcaagaggtcatg
ctttcaaagcggatggaagagggcgaaggcatcataaaggacattattacccagtctggg
ctccttcttcctgagttttatcacattgggcgcagtctttctaaaaaagctcttgcggtt
ttggatcctgcagaaagcggacgtacgagaaaggaaatcagcgaggagatggccgatcgc
cggcgtctgaaacaggcatacggagaggtgcttcgctccttgtatcctgaaatgcgtcat
tatatggcaatgaaaaagcggctggatgagcgtggggagccggtgacggttttgagtagt
gatgaagaagtgtgtaagcagcgcgacaagttgctttcctgtttacaaaaggtggacttg
caattagaggagatagatcgcttttctcgaaaatttttggacaccgcgcgaaaaatacgg
gaatacaagcggcgtaaagatcgccacgaaaagcaacttatgattgctgacctgtgtgac
atgcgcaagattgggcgtggtctggccgtgccccgtcagcgtgcaaagttggaagagacg
cttggtatgtctgcagattgtattcaagagatctatacacagattcaaaaagtgacacgc
aggctgcgacgcatcgagtatgactttgaaaataccatcgacggtattttatccatggcg
cgggcaattcaccggggtcatgtcatgctcaagaaggcaaaggataagctcattaatgct
aatctgcgtttagttgtgtcgattgcaaagaagtacacaaaccgtggattgctttttttt
gatctcgtgcaagagggcaatattgggctgattaaggcggtagaaaagtttgaatatcgc
aagggatataaattttccacgtatgcgacgtggtggattcgccaggcaattacccgttct
atttccgatcaggcgcgcaccattcgggttccggtacacatgatagagcagataaataaa
gtgacgcgtgagtctcggcagttgttgcaaaagtttgggcgtgagccttctgatgaagaa
attgcgcagcagctctgttggacagttgaaaaagttaagcaggtaaaaagtgttgcgcgc
gagcctatctctcttgaaactccaattggagaggaggaggactcttccttgggtgacttt
gtccctgacgctgacgtggaaaatccctctcgagttacagaaagagtcttgcttaaagag
gaagtgcgatctatcctctccgctcttcctgcgagggagcacgaagttttgagaatgcgt
tttggtctcgatggagactactctcaaacgttggaagaggtcggtttgtactttgatgtg
acgcgtgagcgtattcggcagatagaggcgaaggcccttaagcgtttgcgtcatccacga
cacagcagaagattgaaggatttccttgacagttag
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