Treponema pallidum Fribourg-Blanc: TPFB_0770
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Entry
TPFB_0770 CDS
T02651
Name
(GenBank) putative ATP-dependent RNA helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
tpb
Treponema pallidum Fribourg-Blanc
Pathway
tpb03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
tpb00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
TPFB_0770
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tpb03019
]
TPFB_0770
03009 Ribosome biogenesis [BR:
tpb03009
]
TPFB_0770
Enzymes [BR:
tpb01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
TPFB_0770
Messenger RNA biogenesis [BR:
tpb03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
TPFB_0770
Ribosome biogenesis [BR:
tpb03009
]
Prokaryotic type
rRNA helicases
TPFB_0770
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
DbpA
Cas3-like_C_2
CMS1
ERCC3_RAD25_C
Motif
Other DBs
NCBI-ProteinID:
AGK84418
LinkDB
All DBs
Position
838714..840663
Genome browser
AA seq
649 aa
AA seq
DB search
MQGAWLGAHRERAPRALERCGVQRSLCVFVSTRKFHFLLHFPSMGVSFEELGLNEQSLAA
VRLKGFRCPTPIQAAAIPRLLAGDANIIAKARTGTGKTAAFGLPLIQELGSPCEHPGALV
LVPTRELAAQVASELSSLRIQKIPRIHTVYGGVSIAEQLRNLEQGGEIIVGTTGRVIDHI
ERGSLELSYLRYFILDEADEMLNMGFVEDIESIFSHANKDARVLMFSATMPRQILSIAST
FMGSYEVVEEVTPEEARPLIEQFMWVVRDADKIEALVRLIDVSDNFYGLVFCQTKADADT
VAKSLDERHYHVAALHGDIPQSQREKILERFRTKRARILVATDVAARGIDIEGITHVVNY
SIPHDSATYTHRVGRTGRAGSQGIAISFVRPHETRRMEYLSKHCNGELKASTVPLVEHIL
TQKEGRIFSSLKTHLCQLLSEGVHGTFTRFAQRLLQEDLKARVAEALGTSADVPQEPNVS
LVAALLQIHYGTALDPRQYRDIKTITPETARARPHDAEKAYVRIEYGKKSYLTRKRVVQF
ICALVKIPGHLVDRVDITERCAFARIPRRAAEEAVRLSKKRKDLPRVSFVGHASRLRNTA
TPAEKSTYPRRLPSGEGLREQISRRTSSSKKASGKPEDSLPPPQEHRLD
NT seq
1950 nt
NT seq
+upstream
nt +downstream
nt
gtgcaaggggcgtggttgggagcccatagagaaagagctcccagagcgctggaacgctgc
ggtgtccagcgctctttgtgtgtttttgtctctacaagaaagttccactttttgctacac
ttcccttctatgggcgtgtcctttgaagagcttggtttgaatgaacaatcgcttgcagcg
gtgcgactcaaggggtttcggtgcccaactcccatccaggctgctgccattccccgactg
ttggcaggggatgcgaatatcatcgcaaaagcccgaaccgggactggaaaaacggccgcc
ttcggcctcccccttatccaagaactgggaagcccgtgcgaacacccaggggccttggtg
cttgttcctacaagggagctcgctgcgcaggtcgcaagcgaactgagctccctgaggata
caaaaaatacctcggattcacaccgtgtacggtggggtctccatcgcggagcagctgcgt
aatctcgaacagggtggagagataatagtaggaacgaccgggcgcgtcatcgatcatatt
gagcgcggttctctcgagctgtcttatctgcgctacttcatattagacgaagcggatgag
atgctaaacatgggtttcgttgaggatatagagtctatcttctctcatgcaaataaagac
gcacgcgtccttatgttttctgccactatgcccaggcagatcctttctattgcctctacc
ttcatgggaagctacgaggttgttgaagaagtcactccagaagaggcgcgcccgctcatt
gaacaatttatgtgggttgtaagggacgctgacaaaatcgaggcgcttgtgcgccttatt
gatgtgagcgacaacttttacggtctggtgttctgtcaaaccaaggcggacgccgacact
gttgcgaaatctctagacgaacgccattaccatgttgctgcacttcacggagatattccg
caaagccagcgagaaaaaattctcgagcgctttcgtacaaaacgagcgcgtatcctcgtc
gccactgatgttgccgctcgcggcattgacatcgaaggaattacgcacgtggtgaactac
tccattcctcatgatagcgctacttacacgcaccgcgtcggcagaactggacgcgcagga
tcacagggtatcgctatcagttttgtacgcccacacgagacacgacggatggagtatctg
agtaaacactgtaatggcgaattgaaagctagtacggtacctttggtggagcacatcctt
actcaaaaggaggggcgtattttctcgtccctcaagactcatctttgccaattactctct
gaaggggtgcacggaacctttacccgttttgcgcagcggctgctccaagaagaccttaaa
gctcgcgtggcagaagccctgggtacttccgccgacgttcctcaggaaccgaacgtgtcg
cttgtcgccgcgctcctgcaaatccactacggtactgcgctggaccccaggcagtaccgg
gatattaaaacgattacgccagagacggcccgcgcacgtccccatgacgcggaaaaggcg
tatgtgcgcattgagtacggaaaaaaaagctacctcactcggaaacgtgttgtgcagttc
atctgtgccctggtaaaaatccccggtcatcttgtagatcgcgttgacataaccgaacgt
tgcgcgtttgcgcgcataccccgacgcgcagcggaggaagcagttcgcttatccaagaag
cgcaaggacctgccgcgcgtttccttcgttgggcacgccagtcgcctaagaaataccgct
acccctgcagaaaagtctacctatccaaggcgcctcccttccggagaaggcctaagggag
cagatctcaaggagaacctcttcctctaagaaggcttctgggaaaccggaggattctctt
ccccctccccaagaacatcgccttgattga
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