Thermoanaerobacter pseudethanolicus: Teth39_1588
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Entry
Teth39_1588 CDS
T00649
Name
(GenBank) protein of unknown function UPF0027
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
tpd
Thermoanaerobacter pseudethanolicus
Brite
KEGG Orthology (KO) [BR:
tpd00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
tpd03016
]
Teth39_1588
Enzymes [BR:
tpd01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
Teth39_1588
Transfer RNA biogenesis [BR:
tpd03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
Teth39_1588
Prokaryotic type
tRNA splicing ligases
Teth39_1588
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RtcB
Motif
Other DBs
NCBI-ProteinID:
ABY95232
UniProt:
B0KB44
LinkDB
All DBs
Position
complement(1621434..1622798)
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AA seq
454 aa
AA seq
DB search
MRVDAVIYVNDTLKELLHEDQSLRQITNAATLPGVVKPVIGMPDIHEGFGLPIGGVMAIE
EKGVISAGAVGYDINCGVRLLRTNLEAAHFNKELLYKLIERIEYYVPTGIGKKGRHKGIT
RLIFDDVVHNGVEAVIKAGFGKKSDLNFIEEGGKLSGADISAVSKEAQERGEEQLGTLGG
GNHFIEIQQVDSIFDEKLAERFGLFKGQIAAMIHTGSRGFGHQIATDYTKILWEAAKKYG
VDVPEKGLAAAPIDSKEGKAYYKAMAAAVNFAFSNRQIIMFDVIKAFEDVLKKSSESMGF
RLVYDVAHNIAKWEEHGGKKLLVHRKGATRALPAGHPQNPSFYKESGHPALIPGSMGTGS
YVVVGTEKAAETFYSVNHGAGRRLSRNKAKKITKEEFEKAMGDVIYNVRSFKDIVDESPL
AYKDVEEVISVLSERGITTPVARLVPLAVVKGAD
NT seq
1365 nt
NT seq
+upstream
nt +downstream
nt
atgcgtgttgatgcagtaatttatgtgaatgataccttaaaagagcttttgcatgaagac
cagtctttaagacagattaccaacgctgctacccttcctggagtggtgaaaccagttata
gggatgccggatattcacgaaggatttggtcttcctataggaggagttatggcgatagag
gagaaaggggttatttcagcgggagccgtaggatatgatattaattgtggtgtaaggctc
ttgagaactaatcttgaagcagcgcattttaataaagagcttttgtataagcttatagaa
cggattgagtattatgttcccacaggcatagggaaaaagggacggcataaaggtattacg
aggttaatttttgatgatgtagttcataatggggtagaggctgtcattaaagcaggtttt
gggaaaaaatcggatttaaactttattgaagagggtggaaagctttcaggggcagacatt
tctgctgtgtcaaaagaagcgcaagaaagaggagaagagcagcttggcactttgggtggt
ggcaatcattttatagagattcaacaggttgactctatttttgatgagaaattggcagag
cgttttggacttttcaaagggcaaattgctgcaatgattcacacaggaagccgcgggttt
ggacatcagattgcgacagattatactaagattctatgggaggcagcaaagaaatacggt
gttgatgttcctgaaaaaggacttgcggcagctcctattgattcaaaggaaggtaaggcg
tattataaagccatggcagcagcagtgaattttgctttttcaaacagacaaataattatg
tttgatgttataaaagcatttgaagatgtattaaaaaaatcttcagaatctatgggcttt
cgactggtatatgatgttgctcataatattgctaaatgggaagaacatggaggaaaaaag
cttcttgttcacagaaagggagcgacgagagctttaccagcagggcatccgcaaaatcct
tctttttacaaagaatcaggacatcctgctcttattcccggcagtatgggtacgggttct
tacgttgtggttggcacagagaaagcggcagaaactttttattcggtaaatcacggggca
ggacgaaggctttctcgcaacaaagcgaaaaaaatcactaaagaggaatttgaaaaggct
atgggagatgttatatacaatgtcaggtcttttaaggatatagttgatgagtcgccactg
gcctataaagatgtggaagaagttatttctgtcctttcagaaagaggaattacaacacct
gttgcacgccttgtacctcttgcggttgtaaaaggtgcagattaa
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