Thermofilum pendens: Tpen_0269
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Entry
Tpen_0269 CDS
T00446
Name
(GenBank) protein of unknown function UPF0027
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
tpe
Thermofilum pendens
Brite
KEGG Orthology (KO) [BR:
tpe00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
tpe03016
]
Tpen_0269
Enzymes [BR:
tpe01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
Tpen_0269
Transfer RNA biogenesis [BR:
tpe03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
Tpen_0269
Prokaryotic type
tRNA splicing ligases
Tpen_0269
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RtcB
Complex1_LYR
Motif
Other DBs
NCBI-ProteinID:
ABL77679
UniProt:
A1RWU9
LinkDB
All DBs
Position
complement(237423..238871)
Genome browser
AA seq
482 aa
AA seq
DB search
MAPPLRRITEYLWEIPEKYKPGMNVPGLVIADEVLISKMKEDLTLEQVANVAMLPGIYKY
SIVLPDGHQGYGFPIGGVAAFDAEKGVLSPGGVGYDINCGVRVLSTNLTEQEVRPKLREL
AETLFRKIPSGLGSTSGLRLSHAELDRVLEEGVEWAIERGYGWREDMEHIEEKGRMEGAD
ADAVSNEAKQRGSNQLGTLGSGNHFLEVQRVDKIYDPEVAKVFGIEREGQVTVMIHTGSR
GLGHQVASDYLKIMERVVRKYNMPLPDRELVSVPATSPEAERYFAAMKAAANFAWTNRQV
ITHWVRESFRAVFKTDPDKLGLNVIYDVAHNIAKLEEHVVDGKRVKVYVHRKGATRAFPP
GHPEIPADYKSIGQPVLIPGSMGTASYILVGTQKAMDLTFGSSPHGAGRMQSRAEARRSV
RGQEIKSELESRGIVVRAASLAVVAEEAPDAYKDVDRVVMVADAVGIARKIVRMTPIAVV
KG
NT seq
1449 nt
NT seq
+upstream
nt +downstream
nt
atggctccgccacttaggaggatcaccgagtacctatgggaaataccggagaagtacaag
cccggcatgaacgtgccggggctcgtcatagcggatgaagtgttaatatcgaagatgaag
gaggatttaacgctcgagcaggtcgctaacgttgccatgttgccgggcatctacaagtac
tctatagttcttccagacggccaccagggttacggcttcccaataggcggcgtcgccgcg
ttcgatgcagagaaaggcgtgcttagccccggaggcgtaggctacgatatcaactgcggc
gtaagagtcctgtccacgaaccttacggagcaggaggttaggccgaaactcagggagctc
gcagagacccttttcaggaagatcccctcggggcttggaagcacgagtggtttaaggctg
agccacgcggagctggaccgcgtactcgaggagggggtcgagtgggctattgaaagaggc
tacggctggagagaggacatggagcatatagaggagaaggggagaatggagggcgcagat
gcagacgcggtgtccaacgaggccaagcagaggggtagcaaccagctgggcacgctgggt
agcgggaaccacttcctggaagtccagagggttgacaaaatctacgaccccgaggttgca
aaggttttcgggattgagagggagggacaagtaaccgtaatgatacacacaggtagcagg
gggcttggacaccaggttgcaagcgactatctgaagataatggagagagtcgtaagaaag
tacaacatgccgctaccggacagggagcttgtatccgtgccggcgacgtccccggaggcc
gaaaggtacttcgcagccatgaaggccgcggcgaactttgcctggacgaataggcaggtt
atcacacactgggttagggaaagcttccgagcggttttcaagacagacccggataagctc
ggtctcaatgtgatctacgacgtagctcacaacattgccaagctcgaggagcacgtggtg
gacggtaaaagagtgaaagtctacgttcacaggaagggggctacgcgggcctttccaccc
gggcacccagagatccccgcagactacaaatccataggtcaacccgtcctgatacccggc
tctatgggtactgcgagctacatactcgtaggaacgcagaaagccatggatttgacgttc
ggctcctctccgcacggcgctggaaggatgcagagccgcgctgaagcgcgtagaagcgtg
aggggacaggagataaagtccgagcttgagagtagaggtatagtggttagggctgcgagc
ctagctgtcgtcgccgaggaggctccagacgcgtacaaggacgtggacagagtagttatg
gtcgcggatgcagtcggcattgctaggaagatagtgaggatgacgcccatagcagtggtg
aaaggctaa
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