Thermofilum pendens: Tpen_0582
Help
Entry
Tpen_0582 CDS
T00446
Name
(GenBank) ribosomal RNA-processing protein RRP4
KO
K03679
exosome complex component RRP4
Organism
tpe
Thermofilum pendens
Pathway
tpe03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
tpe00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Tpen_0582
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tpe03019
]
Tpen_0582
Messenger RNA biogenesis [BR:
tpe03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Core exosome factors
Tpen_0582
Prokaryotic type
Archeal mRNA degradation factors
Exosome components
Core exosome
Tpen_0582
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ECR1_N_2
RRP4_S1
KH_1
KH_6
RRP40_S1
KH_2
S1
Motif
Other DBs
NCBI-ProteinID:
ABL77987
UniProt:
A1RXQ7
LinkDB
All DBs
Position
complement(533607..534320)
Genome browser
AA seq
237 aa
AA seq
DB search
MRGGAVTIHVKDRQIVAPGEFVGEQGRFRVEGQVFRVGRKYYSKVLGVVTVDEENRVVKV
IPLKGKYFPVEGHIVVGKVVDIGFTSWEVDINSPYVAVLPVSEVTSRPVTISRNELSRIL
DVGDLILAKIVSFDLSKDPVLTIKESRLGKIPRGTLVEIPPQKVPRVIGRRGSMVSMIED
LLGVKLIVGQNGRIVVVGDDPQRVEIAVLAVRKIEAEAHTTGLTDRIKQFIEERLRS
NT seq
714 nt
NT seq
+upstream
nt +downstream
nt
ttgagaggtggtgctgtgaccatacacgttaaggataggcagattgttgcgccaggagaa
tttgtcggcgaacagggcaggtttagggtagaggggcaagtcttcagggtgggcaggaag
tactactcgaaggtgctgggagtagttacggtggacgaggagaaccgtgtcgttaaggtc
attccccttaaggggaaatacttcccggtagagggacacatcgtcgtggggaaagttgtc
gatatagggttcactagctgggaggtcgacataaactctccgtatgtggctgtcctacca
gtctcggaggttaccagcagaccagtcaccatctcgagaaacgagctttccaggatactc
gacgtgggcgacctgatactggcgaagatagtgtccttcgatctcagcaaagaccctgtt
ctcacgattaaagagtcaaggctcgggaaaataccccggggaactctcgtagaaattccg
cctcaaaaagtacccagggttataggtaggaggggctccatggtctccatgatcgaagac
ctcctcggcgtgaagctgatagtgggacagaacggaaggatagtcgttgtgggcgacgat
ccccagagggtcgaaatagccgttctcgctgttaggaagatagaggcggaggcgcataca
acaggtttaaccgataggataaagcagtttatagaagagaggttgagatcatga
DBGET
integrated database retrieval system
