Thermofilum pendens: Tpen_0583
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Entry
Tpen_0583 CDS
T00446
Name
(GenBank) Shwachman-Bodian-Diamond syndrome protein
KO
K14574
ribosome maturation protein SDO1
Organism
tpe
Thermofilum pendens
Pathway
tpe03008
Ribosome biogenesis in eukaryotes
Brite
KEGG Orthology (KO) [BR:
tpe00001
]
09120 Genetic Information Processing
09122 Translation
03008 Ribosome biogenesis in eukaryotes
Tpen_0583
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
tpe03009
]
Tpen_0583
Ribosome biogenesis [BR:
tpe03009
]
Eukaryotic type
Pre-60S particles
Export and cytoplasmic maturation factors
Tpen_0583
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SBDS_domain_II
SBDS_N
SBDS_C
EFG_C
DUF4426
Motif
Other DBs
NCBI-ProteinID:
ABL77988
UniProt:
A1RXQ8
LinkDB
All DBs
Position
complement(534317..535024)
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AA seq
235 aa
AA seq
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MSGKRRLSIARLERGGKRYEIIVDVEKAWLYKNGEKLNVREIMEGEFIYYDANRGLKASE
SELKKVFGTDNIYSVAEIILKQGELLLTTEQRRELIEQKKRQIIELISRNAVDPRTNAPI
PAKRIELALEEARVSIDPFKPAELQVPDVIKALRMTLPMKIMKAIMAVYIPAAYVGKAYH
AVSKMGKVLRENYRSDGSLDLEIEVPAGLQSSIVEKVASLTKGSGDVKLIRMEPV
NT seq
708 nt
NT seq
+upstream
nt +downstream
nt
atgtcgggtaagaggaggctaagcatagctaggctagagcggggcggcaagaggtacgag
ataatagtggacgttgaaaaggcttggctctacaagaacggagagaaactgaacgtgagg
gaaataatggagggagaattcatttactacgacgctaatagggggttaaaggcctccgag
tcggagctgaagaaagtgttcggcaccgacaacatttactctgttgcagagataattctc
aagcaaggagagttgcttctcacaacggagcagagaagagagctcatagagcagaagaag
agacaaataatagagcttatctccaggaacgctgtagacccgcggacaaacgcccccatc
ccggctaagcgtatcgagctagccctcgaagaagcaagggtgagcatcgaccccttcaag
ccggcagagttacaggtacctgacgtgattaaagcgcttagaatgaccctcccaatgaag
ataatgaaggctataatggctgtctacataccggccgcctacgtgggtaaagcttaccat
gctgtgagcaagatggggaaggtcctaagggaaaactacagaagcgacggttcgctggac
ttggagatagaagtcccagcagggctacagtccagcatagttgagaaagtagcgtctctg
actaaaggttcgggggacgtgaagctcatacgtatggagcccgtttga
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