Trueperella pecoris: HLG82_02120
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Entry
HLG82_02120 CDS
T07390
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
tpec
Trueperella pecoris
Pathway
tpec03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
tpec00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
HLG82_02120 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
tpec03021
]
HLG82_02120 (rpoC)
03400 DNA repair and recombination proteins [BR:
tpec03400
]
HLG82_02120 (rpoC)
Enzymes [BR:
tpec01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
HLG82_02120 (rpoC)
Transcription machinery [BR:
tpec03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
HLG82_02120 (rpoC)
DNA repair and recombination proteins [BR:
tpec03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
HLG82_02120 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Motif
Other DBs
NCBI-ProteinID:
QOQ38358
LinkDB
All DBs
Position
444092..448066
Genome browser
AA seq
1324 aa
AA seq
DB search
MLDVNLFDQLSISLATSEDVRKWSHGTVTKPETINYRTLKPEKDGLFGEQIFGPTRDWEC
ACGKYKRPRYKGIVCERCGVEVTRSKVRRERMGHIELAAPVTHIWYFKGVPSRLGYLLDI
APKDLEKVIYFAAYMVTDVDEQRRHDDMPSLTAEYELERENLLKERDAAVERALRAEEET
LAEAETAGEDAASRGKIKRTTQADTRRVRTRYENDIKNLEEIWEKFTKLKVGDLEGDEVA
YREMETRWGDYFSASRGAEAIQRRLQTFDLEAEHELLVDQIENGTAQRKTRALKRIKVVN
AFLHSKTSPEAMVLDAIPVIPPDLRPMVQLDGGRFATSDLNDLYRRVINRNNRLQRMLDL
NAPEIMVNNEKRMLQEAVDALFDNGRRGRPVQGAGNRPLKSISDMLKGKQGRFRQNLLGK
RVDYSGRSVIVVGPTLKLHQCGLPKTMALELFKPFVQKRLVDLELAKNIKAAKRLIERQR
DEVFDVLEEVIQEHPVLLNRAPTLHRLGIQAFEPQLIEGKAIRLHPLVCSAFNADFDGDQ
MAVHLPLSVEAQAEARILMLSANNILKPSDGRPVTVPAQDMIIGLYHLTTVRENEVGAGR
YFTSIAEAQMAHDLGDIHLNAPINIRFGADEIIVPRDWQAPEGYEEGDDIILKTTLGTAL
FNDALPTTFPYVNESVGKKVLGNIVNELAERYPKVDAAASLDALKETGFYWGGRSGVTIA
VSDVIAPANKAEILEEAEERAAKIEQDFQEGNIRDEDRRRDLVALWTEVTDKVADEMRKN
FDDLNNINQMVQSGARGNWMQIRQVAGMRGLVADPKGEIIPRPIKSNYREGLSALEYFTA
THGARKGLADTALRTADSGYLTRRLVDVAQDVIVRESDCGTSRGLPKPIVALDGEGKEIR
LATVDGMTREVTEAEVSATEWAAAELIRSEDIDTSVYARTLAKDAVDGDGNVVVEAGTDI
GDVALEKLLEAGIKQIHVRSVLTCDSRVGTCAKCYGRSLATGKLVDIGEAVGIVAAQSIG
EPGTQLTMRTFHTGGAASAEDITQGLPRVQELFEARTPKGEAPIAEAAGRLEIEELERSR
RLILKRDDGDEDLTYLVGKRAKLLVPEGSHVPVGQQLVEGSVDPKKVLRISGRRVAQLHL
VSEVQNVYRSQGVEIHDKHIEVIVRQMLRRVTVLEAGTTALLPGELVDVAQFEAANRAAM
AEGGKPASGRPELMGITKASLATDSWLSAASFQETTKVLTEAALNAKSDPLDGLKENVIL
GKLIPAGTGLEQLRRIKVEPTAEARSEYEQLNTFAGLDSFDDIYGYGSLDDYDTSMGYGY
GLNF
NT seq
3975 nt
NT seq
+upstream
nt +downstream
nt
ttgctcgacgtcaatctttttgaccagctttccatctcgctcgccacgtccgaggacgtg
cgcaagtggtcgcatggaactgttaccaagcctgaaaccattaactaccgtacgctcaag
cccgaaaaggacggccttttcggcgagcagatctttggcccgacgcgcgattgggagtgc
gcctgcggcaagtacaagcgtccccgttacaagggcatcgtgtgtgagcgctgtggcgtt
gaggtcactcgctccaaggtgcgccgcgagcgcatgggccacattgagctcgccgcgccc
gtgactcacatctggtacttcaagggtgtgccctcgcgccttggctacctgcttgacatc
gctccgaaggacttggagaaggtcatctacttcgcggcctacatggtcaccgatgtcgac
gagcagcgccgccatgacgacatgccgtcgttgaccgccgagtacgagctcgagcgcgag
aatcttctcaaggagcgcgacgccgccgtcgagcgcgcgctgcgtgccgaggaagagacc
cttgccgaggccgagaccgccggtgaagatgctgcttcgcgtggcaagatcaagcgcacc
acgcaggccgatacccgccgcgttcgcacccgctacgagaacgacatcaagaatctcgag
gagatctgggaaaagttcaccaagctcaaggtcggcgatcttgaaggtgacgaggtggcc
taccgcgagatggagacccgctggggcgactacttctcagcatcgcgcggcgcggaggct
atccagcgtcgtctgcagaccttcgatctcgaggccgagcacgagttgctcgtcgatcag
atcgagaacggcacggcccagcgtaagacccgcgcgctcaagcgcatcaaggtcgtcaac
gcattcctgcattccaagacctccccggaggccatggttcttgacgccatcccggtcatc
ccgccggacctgcgcccgatggttcagctcgacggcggccgcttcgcgacctcggatctc
aacgacctctaccgtcgtgtcatcaaccgcaacaaccgtctccagcgcatgctcgatctg
aatgcgcccgagatcatggtcaacaacgaaaagcgcatgttgcaggaagctgttgacgcg
ctcttcgataacggtcgtcgcggccgcccggttcagggagcaggcaaccgtccgctgaag
tcgatttccgacatgctcaagggcaagcagggtcgtttccgccagaacctcctcggtaag
cgcgtggactactcgggccgatcggtcatcgtcgtcggcccgaccctcaagcttcaccag
tgtggtctgcccaagaccatggctctggagctgttcaagccgttcgtgcagaagcgcctc
gtggatctcgagctggccaagaacatcaaggccgctaaacgactcatcgagcgtcagcgc
gacgaggtcttcgacgtgctcgaagaggtcatccaggaacacccggttctgctcaaccgt
gcacctactcttcaccgtctcggcatccaggcgttcgagccgcagctgatcgaaggtaag
gccatccgccttcacccgcttgtctgctcggccttcaacgccgacttcgacggcgaccag
atggctgtccacctgccgctgtcggttgaagcccaggctgaggcccgtatcctcatgctg
tcggctaacaacatcctcaagccttccgacggccgcccggtcaccgtgccggcacaggac
atgattatcggcttgtaccatctgaccaccgttcgcgagaacgaggtcggcgctggccgt
tacttcacctcgatcgccgaggcgcagatggctcacgatctgggcgacatccacctcaac
gctccgatcaacatccgtttcggcgctgacgagatcatcgttccccgtgattggcaggct
cccgagggctacgaagagggcgacgacatcatcctcaagaccaccctcggtaccgcactg
ttcaacgatgcgctgccgacgaccttcccctacgtcaacgagtccgtgggcaagaaggtt
ctgggcaacatcgtcaacgagttggccgagcgttacccgaaggtcgacgccgccgcttcg
cttgacgccctgaaggaaaccggcttctactggggcgggcgttccggtgtgaccatcgcc
gtctctgacgtgatcgcgccggccaacaaggccgagatcctcgaagaggcagaagagcgt
gctgcgaagatcgagcaggacttccaagaaggcaacatccgtgacgaggatcgtcgtcgc
gatctcgttgccctgtggacggaagtgaccgacaaggtcgctgacgagatgcggaagaac
ttcgacgacctgaacaacatcaaccagatggttcagtccggagctcgtggtaactggatg
cagattcgccaggttgccggcatgcgtggcctcgtggcggacccgaagggcgagattatt
cctcgcccgattaagtccaactaccgcgagggcctgtccgctctcgaatacttcaccgca
acccacggtgcacgtaagggcctggctgacaccgctctgcgtaccgctgactcgggttac
ctcacccgtcgtctcgtggacgtggcccaagacgttatcgttcgcgaatccgactgcggc
acgtctcgcggtctgcccaagccgatcgtcgcccttgatggcgagggcaaggaaattcgc
cttgccaccgtcgacggcatgacgcgcgaggtgaccgaggctgaggtttccgccaccgaa
tgggcagccgcagagctgatccgctcggaggacatcgacacctccgtctacgcgcgcacc
cttgccaaggacgccgtggatggcgacggtaacgtcgtcgtcgaggctggaaccgacatc
ggcgacgtcgccctcgagaagctccttgaggctggcatcaagcagatccacgtccgctcg
gtcctcacctgtgactcgcgcgttggcacctgtgctaagtgctatggtcgttcgctggcc
accggcaagctcgttgacatcggagaggccgtcggtatcgtcgccgcgcagtcgattggc
gagccgggcactcagctgaccatgcgtaccttccacaccggtggtgcggcgtcggcagag
gacatcacccagggtcttccgcgtgttcaggagctcttcgaggcccgtacccccaagggc
gaggccccgattgccgaggccgccggacgcctggagatcgaggaactcgagcgctcgcgc
cgcctcatcctcaagcgcgacgacggcgacgaggacctgacctacctggtgggcaagcgc
gccaagttgctggttcccgagggttcacacgttccggtcggccagcagctcgtcgagggt
tctgttgacccgaagaaggtactgcgtatttcgggccgccgcgtggcacagctgcacctc
gtttccgaggttcagaacgtttaccgctcgcagggcgtggagatccacgacaagcacatc
gaggtgatcgttcgccagatgctacgccgcgtaaccgtcctcgaggctggcacgacggcg
ctcctgccgggcgagctggtggatgtcgctcagttcgaagcagccaaccgggccgcgatg
gctgagggcggcaagcccgcctcgggccgtccggagctcatgggtatcacgaaggcctcg
cttgcgactgactcgtggctgtcggccgcgtccttccaggagaccaccaaggtcctcacg
gaggccgcgctcaacgctaagtccgacccgcttgacgggcttaaggagaacgtcatcctc
ggtaagcttatcccggccggtaccggcctcgagcagcttcgccgcatcaaggtcgagccc
accgcggaggcgcgctccgaatacgagcagctcaacactttcgccggtttggattcgttc
gacgacatttacggctacggttcactcgacgactacgacacgtcgatgggctacggttac
ggattgaacttctaa
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