Trueperella pecoris: HLG82_06000
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Entry
HLG82_06000 CDS
T07390
Name
(GenBank) ribonuclease J
KO
K12574
ribonuclease J [EC:3.1.-.-]
Organism
tpec
Trueperella pecoris
Pathway
tpec03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
tpec00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
HLG82_06000
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tpec03019
]
HLG82_06000
Messenger RNA biogenesis [BR:
tpec03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
HLG82_06000
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
RNase_J_b_CASP
RNase_J_C
Lactamase_B
Lactamase_B_2
RMMBL
Anti-Pycsar_Apyc1
Lactamase_B_6
HBS1_N
Motif
Other DBs
NCBI-ProteinID:
QOQ39035
LinkDB
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Position
complement(1260215..1261891)
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AA seq
558 aa
AA seq
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MTKTKLPPPIDNGTLRIVPLGGIGEIGRNMTVFEIDGRMIIVDCGVLFPEESQPGVDLIL
PDFDYIKDRLHQVDGIILTHGHEDHIGGVPYLLRLREDIPIIGSQLTIALVEAKLAEHRI
KPYTMVVEEGDIENLGNFECEFVAVNHSIPDALAVFIRTNAGTVLHTGDFKMDQLPLDGR
ITDLRSFARLGEEGVDLFMCDSTNAEVPGFVASEANIGPVLENVFAQSSGKIVVASFASH
VHRVQQVLDAAYKFDRKVCFVGRSMVRNMGIAEELGYLSVPEDTLIDLKNADSVADDEIV
YMSTGSQGEPMAVLARIASGSHKTISVGQGDTVIFASSLIPGNENSVFRLINGLMKLGAK
VVHQGNAKVHVSGHAAEGELLYCYNILEPEYAMPVHGEVRHLVANGAIAVRTGVPAENVI
LAEDGSVIDMVDGKCAIVGEVPCGYVYVDGSSVGEIGEAELTDRLTLGEEGFIAIFAVID
AQERKVLTGPHIQARGMAEDDSVFEEILPDVRTALDEAISNESATTYQMQQAMRRVVGRW
VARKLRRKPMIIPTVIEA
NT seq
1677 nt
NT seq
+upstream
nt +downstream
nt
gtgactaagacgaaactacctcctcccattgacaacggcactctacgcatcgttccgctc
ggcggaattggcgagatcggccgcaacatgacggtctttgagatcgacggccgaatgatc
atcgtcgattgcggtgtgctattccccgaagagtcccagccgggagtcgacctcatcctt
cccgacttcgattacatcaaagaccgtcttcaccaggtggacggaatcatcctcacccac
ggccatgaggatcacatcggcggcgtgccttacctcctgcgcctgcgtgaagatatcccg
atcatcggatcccaactgaccatcgcgctggtcgaagcgaagctcgccgagcaccgcatc
aagccctacaccatggtcgtcgaagaaggcgacatcgaaaacctcggcaacttcgagtgt
gaattcgtcgcggtgaaccactccatcccggatgcgctcgcggtcttcatccgcaccaac
gcgggcacggttctgcacacgggcgacttcaagatggatcagctgccgctcgacgggcgc
attaccgacctgcgttccttcgcccgcctcggcgaagaaggcgtggacctcttcatgtgc
gattcgaccaacgccgaggttcccggcttcgttgcctcggaggcgaacatcgggccggtg
ctcgaaaacgtcttcgctcaatcgagtggaaagatcgttgtcgcctcgtttgcctcccac
gttcaccgcgtccagcaggtgttggacgccgcctacaagtttgaccgcaaggtgtgtttc
gtgggccggtcaatggtgcgcaacatgggcatcgccgaagaactcggctacctttcggtg
cctgaagacacgctcatcgacctgaagaacgcagattcggttgccgacgacgaaatcgtc
tacatgtccaccggctcgcagggcgagcccatggcagtgctcgcacgcattgcctcgggc
agccacaagacgatctcggtcggccaaggcgacacggtcatcttcgcctcctcactcatt
cccggcaacgaaaactcggtattccgcctgatcaacgggctgatgaagctcggggcgaag
gtcgtccatcagggcaacgccaaagtgcacgtctccggtcacgcggccgagggggagttg
ctctactgctacaacatcctcgaacccgaatatgccatgcccgtccacggcgaagtccga
cacctcgtggccaacggtgcgattgccgtgcgcacgggcgtcccggccgaaaacgtcatc
cttgccgaggatggttcggtcatcgacatggttgacggaaagtgtgccatcgtcggcgag
gtgccctgcggttacgtgtacgtggacggttcctccgtgggcgagatcggagaggccgag
ctcactgaccgcctcacgctcggcgaggaggggttcatcgcgatcttcgccgtcatcgac
gcccaagaacgcaaagtcctcaccggcccccacatccaggctcgtggcatggcggaggac
gactccgtcttcgaagagatcctccccgacgtgcggaccgccctcgacgaagccatctca
aacgaatccgccaccacctaccagatgcaacaggccatgcgccgcgtcgtcgggcgatgg
gtggcgcgaaagctccgccgcaagcccatgatcatcccgaccgtgatcgaggcctga
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