Treponema pedis: TPE_0449
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Entry
TPE_0449 CDS
T02803
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
tped
Treponema pedis
Pathway
tped03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
tped00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
TPE_0449
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
tped03021
]
TPE_0449
03400 DNA repair and recombination proteins [BR:
tped03400
]
TPE_0449
Enzymes [BR:
tped01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
TPE_0449
Transcription machinery [BR:
tped03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
TPE_0449
DNA repair and recombination proteins [BR:
tped03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
TPE_0449
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Apocytochr_F_C
Peptidase_M23
Biotin_lipoyl_2
RPOC_hybrid
CdiI
Motif
Other DBs
NCBI-ProteinID:
AGT42945
UniProt:
S5ZS96
LinkDB
All DBs
Position
472423..476697
Genome browser
AA seq
1424 aa
AA seq
DB search
MRDIQDFDSLMIKLASPDTIRAWSYGEVKKPETINYRTLRPERDGLFCERIFGTTKEWEC
FCGKFKSIRYKGVICDRCGVEVTHFKVRRERMGHIELAAPVSHIWYYRSVPSRMGLLLNL
QVAALRSVLYYEKYIVIDANDTDLEPMQLLTEDEYRDARERYGGSFTAGMGADAVKTLLQ
NINLDELAAELRAKMIEKGAKSDQRLLRRIEIVENFRASGNRPEWMILDVIPVIPPDLRP
MVQLDGGRFATSDLNDLYRRVIHRNSRLSKLMELKAPDIIIRNEKRMLQEAVDALFDNSK
RKKAIKGASNRPLKSISDLLKGKQGRFRQNLLGKRVDYSGRSVIVVGPELKLWQCGLPTK
MALELFKPFIMKKLVQKEVVTNIKKAKLLVEQEAPEVFAVLDEVVSEHPVMLNRAPTLHR
LGIQAFEPVLVEGKAIRLHPLVCKAFNADFDGDQMAIHVPLTQAAQMECWNLMLSARNLL
DPANGKTIVFPTQDMVLGLYYLTKERALPEGKQPRRYSSAEEVLMAAECRSVGWQEQIII
DYETSPGKIEKVITTPGRILFNEEMPEGVPFTNDALNDKKIKKLIEDVFRDKGSYLAVQL
LDKLKAVGYKYATYFGATLSMEDMIIPPEKADMLDRANKEVLEIYNQYKGGHITQEERYN
RVVDVWQKANSNLKDILMKRLQEDKGGFNTIHMMATSGARGNKDQINQLAGMRGLMSKPT
GDIIELPIRSNFKEGLNVMEFFISTNGARKGLTDTALKTADAGYLTRRLVDIAQNVVVNE
EDCGTINGIEYTAIKRGDEIVESLSDRITGKYTLERVVHPITGELLIDVNEYITDETAKK
IEEAGIESVKLRTVLTCESKHGVCVKCYGRDLARNKIVRIGEAVGIIAAQSIGQPGTQLT
MRTFHEGGTASKNVEENRVVFNDYSIIVREITGSYVTLKNKHLLFTRKGELKFNRILHEY
KLKKDETALVKTGMRVIKGNPVYTLKNGKEVLSEDIAIAEVRDNMIYLIGNEQAIEIRNG
SEVIVKPEEIIPAGETIATFDPFADPILSEYDGFVRFEDIIIGTTLTEETDEETGVTERR
ISDSHFDKMQPRIFISDESGNPIGEDSYFLPGGAQLLVNEGQEIKAGTVLAKIAKESVKT
KDITGGLPRVSELLEARRPKSPAVLAAINGVVTIKKGLLKGKRTIMVRDDYGRDFKHLVP
IGKRMLVRDGDTVKAGEPLCDGGYDPHDILNILGENALQNYLMKEIKEVYDAQGVTINDK
HVGIIVRQMLRKVQIVSVGDTKFIFNQQVDKYRFHEENKRVMEEGGQPAVARPMFQGITK
AALNIDSFISAASFQETTKVLTNAAIAGSADELRGLKENVIIGHLIPAGTGMKQYRDIKL
FDKNKSDLDIQMNEILERRRLEAEAAQALEEQELIEEESFLDDM
NT seq
4275 nt
NT seq
+upstream
nt +downstream
nt
atgagagatatacaggatttcgacagtttaatgataaaacttgcttcacccgataccatc
agagcgtggtcgtacggtgaggttaaaaagcctgaaaccattaactatagaactctccgg
ccggagagggacggtttgttttgcgaaaggattttcggtactacaaaagaatgggaatgt
ttttgcggaaaatttaaatccatacgctataagggcgttatttgcgacaggtgcggtgta
gaagttactcactttaaggtaagacgtgaaagaatggggcatattgagcttgcggctccc
gtttcgcatatctggtattaccgttccgtgcccagcagaatgggccttttgcttaattta
caagttgcagcccttcgctcggttttatattacgaaaaatacatcgttatagatgcaaac
gataccgaccttgaacctatgcagcttttaaccgaagatgagtatagggacgcaagggaa
cgttacggcggttcttttacggccggaatgggagcggacgctgtaaagaccttattacaa
aatattaaccttgatgagcttgccgccgaactgcgtgccaaaatgatagaaaaaggggcg
aaaagcgaccaaagacttttgcgcaggatagaaatagtagaaaatttccgtgcttcggga
aaccgccccgaatggatgattttggacgtaattcccgttattcctcccgatttaagaccc
atggttcaattggacggaggacggttcgccacttcggatttaaatgatttatatcgccgc
gttattcacagaaacagccgcttaagcaaacttatggagcttaaagcacccgatattatt
ataagaaacgaaaaacgtatgcttcaggaagcggttgatgccttattcgataattccaaa
cgtaaaaaggcgataaaaggagcttcaaacagacctttaaaatcaatttccgatttatta
aagggaaaacaggggcggttccgtcaaaacctgctgggtaaacgggtagactattcggga
cgctccgtaattgttgtaggccccgagcttaaactttggcaatgcggcttacctacaaaa
atggctttggaactgtttaagccttttataatgaaaaaacttgttcaaaaagaagttgtt
accaatatcaaaaaagcaaaactccttgtcgaacaggaagcgcctgaagtatttgcggtt
ttggacgaggttgtaagcgaacaccccgtaatgcttaaccgtgcgccgacccttcacaga
ttgggaatccaagcctttgaaccggttttagttgaaggaaaggctatcaggcttcacccg
cttgtatgtaaggcctttaacgccgactttgacggagaccaaatggcaattcacgtgccg
cttactcaagcagcgcaaatggaatgttggaatcttatgctttcggcaagaaacctgctt
gaccccgcaaacggaaaaactattgttttccccacgcaggatatggttttggggctttat
tatcttacaaaagaaagagccttgcccgaaggtaaacaacctcgccgttattcttccgcg
gaagaagttttaatggctgcggaatgccgttccgtaggctggcaggagcaaattataata
gattacgaaacttctccgggtaaaatcgaaaaagtcataacaacccccggaagaattctc
tttaatgaagaaatgcctgaaggcgttccctttacgaacgatgcgctgaacgataaaaaa
ataaaaaaacttatcgaagacgtatttagggataagggctcatatcttgccgttcagctt
ttggataaattaaaggctgtaggatataagtatgccacttatttcggcgcaactctcagt
atggaagatatgattattccgcctgaaaaagccgatatgcttgatagggctaataaagaa
gttttggaaatttataaccaatacaagggcggccacattacgcaggaagagcgctacaac
cgcgttgtagacgtttggcaaaaagccaactccaaccttaaagacattcttatgaagcgt
ctgcaggaagacaagggcgggtttaatacgattcacatgatggctacctccggtgcccgc
ggtaataaagaccagataaaccagcttgcaggtatgcgaggtcttatgtcaaagcccacg
ggagacattatagaacttcctatccgctctaactttaaagaaggcctaaacgttatggaa
ttctttatttctacgaacggagcaagaaagggtttaaccgatacggctcttaaaaccgca
gatgcgggttatttaacaagacgtcttgtagatattgcgcaaaacgtagttgtaaatgaa
gaagattgcggcacgattaacggaattgaatacactgcgattaaacgcggagacgaaatc
gtagaatcgttaagcgatagaattaccggaaaatatacccttgaacgtgtagttcacccg
attaccggagaacttttgatagatgtaaacgaatacattacagatgagaccgctaaaaaa
atcgaagaagcgggaatagaaagcgtaaaattaagaacggttttaacttgcgaatcgaaa
cacggcgtatgcgtaaaatgttacggtcgggatttggcccgtaataaaattgtccgcata
ggcgaagccgtaggaattattgcagctcaatcaatcggtcagccgggtactcagcttaca
atgcgtaccttccacgagggaggaacggcttctaaaaacgtagaagaaaaccgcgtagta
tttaacgattattcaattatagtacgtgaaattacgggttcttacgttacgcttaaaaac
aaacacttattgtttacacgtaaaggcgaattgaaatttaaccgcatattgcatgaatat
aaacttaaaaaagatgaaacggccttggtaaaaacgggaatgcgtgtaataaagggtaat
cccgtttatacgcttaaaaacggaaaagaagtgctttcggaagatatagctattgcggaa
gtaagggataatatgatttaccttatcggaaacgaacaagctatagaaattcgaaacggt
tctgaagtaattgtaaaaccggaagaaattattcctgcgggagaaacaatagcaaccttt
gacccctttgccgacccgattttgtccgaatatgacggctttgtccgatttgaagatata
attatcggaactactttaacggaagaaaccgatgaagaaaccggtgttaccgaaaggcgc
ataagcgattcacactttgataaaatgcagcccagaatctttatttccgacgaatccggt
aacccgataggagaagactcatactttttgccgggcggagctcagcttttagtaaacgag
gggcaggaaataaaagccggtacggtcttggctaagatagcaaaagaatcggtaaaaaca
aaggatattacgggaggtcttccgagagtttctgagcttcttgaagcccgccgtcccaaa
tcgcctgcggttcttgctgcaattaacggagtagttacgattaaaaaaggcttacttaag
ggtaagcgtacaataatggtacgcgacgattacggccgcgattttaaacatctcgttccg
ataggaaagcgaatgcttgtacgcgacggcgataccgttaaagcgggcgagccgctttgc
gacggaggatatgacccgcacgatattttgaatatcttaggtgaaaatgcgcttcaaaat
tacttaatgaaagaaattaaagaagtttatgatgcgcaaggcgttacgattaacgacaag
catgtaggtataatcgtaaggcaaatgttaagaaaggttcaaatcgtttcggtaggagat
acgaaatttatctttaatcaacaagttgataaatatcgcttccatgaagaaaataagaga
gttatggaagaaggcggacagccggctgttgcccgtcctatgttccaaggaattacaaag
gccgctttaaatatcgattcgtttatttccgcagcctcgttccaggaaactacaaaggtc
ttaacgaatgccgcaattgcaggttctgcggacgagcttagaggcttaaaagaaaacgta
ataatcggtcacttaattcccgcaggaaccggaatgaagcagtatcgtgatataaaactc
tttgataaaaacaaaagcgatttggatattcaaatgaacgaaattttggagcgaagaaga
cttgaagcggaagccgctcaagccttggaagagcaggaacttatcgaagaagaaagtttt
ttagatgatatgtaa
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