Treponema pedis: TPE_1544
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Entry
TPE_1544 CDS
T02803
Symbol
rho
Name
(GenBank) transcription termination factor Rho
KO
K03628
transcription termination factor Rho
Organism
tped
Treponema pedis
Pathway
tped03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
tped00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
TPE_1544 (rho)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
tped03021
]
TPE_1544 (rho)
03019 Messenger RNA biogenesis [BR:
tped03019
]
TPE_1544 (rho)
Transcription machinery [BR:
tped03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
Transcription termination factor
TPE_1544 (rho)
Messenger RNA biogenesis [BR:
tped03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
TPE_1544 (rho)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rho_RNA_bind
ATP-synt_ab
Rho_N
NACHT
OB_RNB
AAA_22
AAA_25
AAA
AAA_14
ResIII
Motif
Other DBs
NCBI-ProteinID:
AGT44039
UniProt:
S6A8L5
LinkDB
All DBs
Position
1595378..1596967
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AA seq
529 aa
AA seq
DB search
MTIRKKKTLPDVSGEGLFDSTGMQEENGNSEERITVATEDKLETSGEKKVVIRPRGRRKQ
EEPSSENTVKPVRRTPVQIKKRQPKEPDEIQPEQIEQTVNTEDLPKIIINDLTKMRMHDL
RDMAIKYGVPEEEISLMKKQEIIFHILKNHTNRGGTIFASGSLETLPDGYGFLRSPQNSY
LSGSDDVYVSPSQIRLFSLKTGDTVYGQIRSPKEGERYFALLRVESVNFDEPSKSQRRIH
FDNLTPLYPKEKLNLETTTQEISTRIMNLFCPIGKGQRSLIVAPPRTGKTIMLQKIANAI
TANHPEVYLIVLLIDERPEEVTDMERTVNAEVISSTFDEQATRHVQVAEMVLEKAKRLVE
HKRDVVILLDSITRLARAYNQTMPTSGKVLSGGVDSNSLHKPKRFFGAARNIEEGGSLTI
IATALIETGSKMDEVIFEEFKGTGNMEVDLDRKLSDRRLFPAINIKRSGTRKEELLLTEE
EMQLMWILRKFINPMEDTDIIEFLIDRMNKTKNNEAFLKSMNAGLAQKE
NT seq
1590 nt
NT seq
+upstream
nt +downstream
nt
atgacaatcagaaaaaagaaaactttacctgatgtttccggagaaggtcttttcgattcg
accggaatgcaggaagaaaacggtaattctgaggagcggattacagtagcgacggaagat
aaacttgaaacctcgggtgaaaaaaaagttgttatccgtccgcgaggaagacgtaaacag
gaagaaccttcctccgaaaatacagtaaaacccgtaagacgaacaccggtacaaatcaaa
aaacgccagccgaaagaacctgatgaaattcaacccgaacaaatcgaacaaacagtaaat
actgaagacttgcctaaaataataattaacgatttaacgaaaatgcgtatgcatgattta
cgcgatatggcaataaaatacggagttcccgaagaagaaatctccttgatgaaaaaacag
gaaattatctttcatattcttaaaaatcatacaaacaggggcggaactatttttgcgtcc
gggtctttggaaaccttgcctgacggttacggatttttacgctccccgcaaaacagttat
ttatccggaagcgatgacgtttatgtttctccgagtcaaatacgcttattcagtttaaaa
acgggagatacggtttacggtcaaatccgctctcctaaagaaggagaacgctattttgca
cttttgcgcgttgaaagcgtaaatttcgatgagccttcaaaatcgcaaaggagaatacat
ttcgataacttaacgcccctttatccgaaagaaaaacttaatcttgaaactactactcag
gaaatatctacgcgtattatgaatttattttgtcctataggaaaggggcagaggagcttg
attgtagcccctccgcgtaccggtaagactattatgcttcaaaaaatagcaaacgcaata
actgcgaatcaccctgaagtttatttaatagtacttcttatagatgagcggcctgaagaa
gttaccgatatggagcgtacggtaaatgccgaggttatttcttccacttttgatgagcag
gctacccgccacgttcaagttgccgaaatggttttggaaaaagcaaaacggcttgttgaa
cataaacgcgatgtagttattcttttagattccattacccgcttggcacgcgcttataac
caaacaatgcctacctccggtaaggttctttctggaggtgtagactcaaattcgcttcat
aaaccgaaacgctttttcggtgctgcccgaaacattgaagaaggcggaagtttaaccata
attgcaacggcccttattgaaacgggcagcaaaatggacgaagttatttttgaagaattt
aagggaacaggcaatatggaagtggatttggatagaaaactttccgatagaagacttttc
cctgcaattaatattaaacggtcgggaacaagaaaagaagagcttcttttaacggaagag
gaaatgcagcttatgtggatattgcgtaaatttatcaatcctatggaagatacggatatt
atcgaattcctgatagacagaatgaataaaacgaaaaataacgaagcctttttaaaatct
atgaatgcaggccttgcacaaaaagaataa
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