Treponema pedis: TPE_1778
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Entry
TPE_1778 CDS
T02803
Symbol
recJ
Name
(GenBank) single-stranded-DNA-specific exonuclease RecJ
KO
K07462
single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
Organism
tped
Treponema pedis
Pathway
tped03410
Base excision repair
tped03430
Mismatch repair
tped03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
tped00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
TPE_1778 (recJ)
03430 Mismatch repair
TPE_1778 (recJ)
03440 Homologous recombination
TPE_1778 (recJ)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
tped03400
]
TPE_1778 (recJ)
DNA repair and recombination proteins [BR:
tped03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
RecJ
TPE_1778 (recJ)
DSBR (double strand breaks repair)
HR (homologous recombination)
RecFOR pathway proteins
TPE_1778 (recJ)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
TPE_1778 (recJ)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DHH
RecJ_OB
DHHA1
ATPgrasp_N
Toprim
QRPTase_C
Motif
Other DBs
NCBI-ProteinID:
AGT44252
UniProt:
S5ZNS4
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All DBs
Position
1816821..1818944
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AA seq
707 aa
AA seq
DB search
MNWQKKEIGRELVNGIIKKYACDSLTAAILVRRGIIEGKDILFYLEDDMRYLYSPFLFKN
MEDAVDRILDAKEEDEKVLIFGDRDVDGITSTTLLYEALKEWGMEVSWQIPTGDESYGLS
VEAVEKHAANDGTLIITVDCGISNFKEIEAANKLGVDVIVVDHHQPQEKLPEAAVIINAR
VEGSGYPHGNLSGCATAWKLITAVRFGMQPFYKQQICFLNVVPVNEAYTIECIKLVNTVQ
TDKITETVIPGMLSFSETRLGSFLSGQQIFVWDAPLQKNQLKKIFGNGIEFNFFDFRTEA
AKQFPQTAELSLLRLKEFSTIGKYSDEPQTEMDAFINIFITVLQHKNNFYGSRSSSEIQL
VALSTLADLMELTGENRIIVRQGLKEMNKAPRFGLSDLFASQKLLGAPIGTEGIAWNISP
LVNATGRMGRPETAIELFLAQTPQERTQKIQDILKMNEERKNLVASAWEQALPIARESLK
DYNEKLAVAVSDKFYRGITGILSGKLAEYFNVPAIAMCLMPDGSAVASMRSARGIHLLDI
LEPYSEFFLDYGGHDFAAGFGIEQKKLPQFLEALKKFSCAMQFENEGEEESINIDAELPH
EYLTPDILKLIDKFEPYGSGFPQLTFSAKKLKLISAVVIGKTEPLHLRLTLDCGRYKWTA
LYWKAEPKLNKEFKTGDYVDAVFRISRNVFNGAVTPQITLIDLKQSG
NT seq
2124 nt
NT seq
+upstream
nt +downstream
nt
atgaattggcaaaaaaaagaaatagggcgtgagcttgtaaacggaattataaaaaaatat
gcttgcgattctttaacggctgcaattttagtaaggcgcggcatcattgagggaaaggat
attttattttatcttgaagatgatatgcgttatttatacagtccctttctttttaaaaat
atggaagatgccgtagatagaatcttggacgcaaaagaagaagacgaaaaagttttgatt
ttcggcgaccgtgatgtggacgggataaccagtacaactcttttatacgaagccttaaaa
gaatggggaatggaagtttcttggcaaattcctaccggagatgaaagctacggcctttcc
gtcgaagccgtggaaaaacacgctgcaaatgacggaacccttataattacggtagactgc
ggtatttccaattttaaagaaattgaagccgccaataaactgggggttgacgtaatagtg
gtagaccatcaccagccgcaggaaaaacttcccgaagctgcggttataataaatgcgcgg
gtggaaggttcgggatatcctcacggtaatctttcaggctgtgcgactgcgtggaaactt
attacagccgtccgtttcggaatgcagcccttttataaacagcaaatttgttttttaaat
gtagttcccgtaaacgaggcttatacaattgagtgtataaaacttgtaaatacggttcaa
accgataaaataaccgaaacggtaattcccggaatgctttcgttttccgaaacgcgtctc
ggctcttttttatccggacagcaaattttcgtttgggacgcacccttacaaaaaaatcaa
ctgaaaaaaatattcggaaacggaatagaatttaattttttcgatttccgtactgaagcg
gcaaaacaattccctcaaacggctgagctcagtcttttacgcttaaaagaattttccaca
ataggaaaatattccgatgagcctcagaccgaaatggacgcttttataaatatttttatt
accgttcttcaacataaaaataatttttacggaagccgctcttcttccgaaattcagctt
gtagcgctttcgacccttgccgaccttatggaattgacgggtgaaaacagaattatcgta
agacagggtttaaaggaaatgaataaggctcctcgtttcggcctttcggatttgtttgca
agccaaaaactcttaggggctcccataggtaccgagggcatagcgtggaatatttcgccc
ttagtaaatgcaactggaagaatgggacgcccggaaacggcaattgaactttttcttgca
caaacgcctcaagagcgcacgcaaaaaattcaggatattttaaaaatgaacgaagaacgt
aaaaatcttgttgcctccgcttgggagcaggctcttcctattgcccgcgaaagtttaaaa
gactataacgagaaacttgcagtagccgtaagcgataaattttaccgcggtataaccggt
attctttccggaaaattggccgagtattttaacgtgcctgcgattgcaatgtgtttaatg
cctgacggaagtgcggtcgcttccatgcgttcggcacgcggcattcatcttttggatatc
cttgagccgtacagcgaattttttttggattacgggggacacgattttgctgcaggtttc
gggatagagcaaaaaaaactgcctcaatttttggaagctcttaaaaagttttcctgtgct
atgcagtttgaaaatgaaggagaagaagaaagtataaatattgatgcggagcttcctcat
gaatatttaactccggatattcttaaacttatagataaatttgagccttacggttcgggc
tttccgcagcttacatttagcgcaaaaaaactgaaacttataagcgcggttgtaataggt
aaaacggaacctcttcatttaagattgaccttagattgcggaagatataaatggacggct
ctttattggaaggcggaaccgaaacttaataaagaatttaaaacgggagattatgtagat
gccgtattccgtatttcgcggaatgtttttaacggagccgtaactcctcaaattactctt
attgatttaaaacaaagcggttaa
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