Treponema pedis: TPE_1949
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Entry
TPE_1949 CDS
T02803
Name
(GenBank) RNB-like protein
KO
K01147
exoribonuclease II [EC:
3.1.13.1
]
Organism
tped
Treponema pedis
Brite
KEGG Orthology (KO) [BR:
tped00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
tped03016
]
TPE_1949
Enzymes [BR:
tped01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
TPE_1949
Transfer RNA biogenesis [BR:
tped03016
]
Prokaryotic type
3'processing and CCA adding factors
3'processing factors
TPE_1949
BRITE hierarchy
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Gene cluster
GFIT
Motif
Pfam:
RNB
HTH_RNase_II
RNase_II_C_S1
Motif
Other DBs
NCBI-ProteinID:
AGT44423
UniProt:
S6A0Y4
LinkDB
All DBs
Position
2002183..2004042
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AA seq
619 aa
AA seq
DB search
MSANTIVLYKNRPAIIINKADGKFEIETESGIKKVREKDFFVLDENNTQNLKTVLNTECP
EADFSEAAEFFENGEASFIELKELLWDNLKPEAIWAAWQEVSASPFFSVESPDKPVKILT
KEKLQEALKKQEEKENEEKIRADFINDLSKCIKTKNFSDFDIKKYAHFLQEVEAFALQKT
EKSKILKEAHLKEECEAAHKLLIQTGYWKIEKNPYPTRCGYPLNSPKIELPPPDLNHEYS
DLTDLTAYAIDNEGSTDPDDAVCFDGEFLWIHIANPADTITPDSKSDLEARKRGATLYLP
EGISRMLGESAVENFALGLKDESYALSFKLKLNGNAEIIESDILRTKIKVNCITYEEADL
QKENPDLKPLFEIAKLNKKKREEAGAVAIEMPEVNISVSMENGEQRVFITPYKSLESSLM
IKEMMLLAGEAAARFAFKNNIPFQFISQEAPEQMKKLPEGLAGEYKKRKGMRPRNVGTIP
SMHAALGIAMYSQVTSPLRRYGDLVAHQQLLKFIDGKEVMKTDDFLMRIAAGDIAGRNCT
SAERASKQHWTLIYLLQNPHWQGEAVILETVKQRARICIPAIGYETDMNLKKELSVNEKI
TVKAEDINLPHLTVRFIQV
NT seq
1860 nt
NT seq
+upstream
nt +downstream
nt
atgtcagcaaatactattgtcctatacaaaaaccgccctgcaataataataaataaagcg
gacggtaaattcgaaattgaaacggaatcgggcattaaaaaagtgcgcgaaaaagatttt
tttgttttagatgaaaacaatactcaaaatttaaaaacggttttaaatacggaatgcccc
gaagcggatttttccgaagcggcggaattttttgaaaacggagaagcgtcttttatcgaa
cttaaggaattattatgggacaatttaaagcccgaagcaatttgggcggcatggcaggaa
gtttcagcttctccgtttttttccgtagaaagcccggataaaccggttaaaatactcact
aaagaaaaactgcaagaggctttaaaaaaacaggaagaaaaagaaaacgaagaaaaaata
cgagccgattttattaacgacttatccaagtgtataaaaacaaaaaatttcagcgatttc
gatataaaaaaatacgctcattttttacaggaagtcgaagccttcgctttacaaaaaacg
gaaaaatcaaagatattaaaagaagctcatctaaaagaagaatgtgaagcggctcataaa
cttttaatacaaaccggttattggaaaatcgaaaaaaatccgtatcctacgcgctgcggt
tatcctttaaattctcccaaaatagaattgcctccgcccgatttaaaccatgagtattcg
gatttaaccgatttaacggcctatgcaatagataatgaaggaagtacggacccggacgat
gcggtatgttttgacggagaatttctttggattcatattgcaaatccggccgatactatt
acacccgattcaaaaagcgatttggaagcccgtaaacgcggagctacattatatttacct
gaaggtatttcccgcatgctgggagaatcggccgtggaaaattttgcactaggtttaaaa
gacgaatcttatgctctttcatttaagttaaagctaaacggaaatgcggaaattattgaa
agcgatattttgcgtacaaaaataaaagtaaattgtataacttacgaagaagcggactta
caaaaagaaaatcccgatttaaaacctctttttgaaattgcaaaattgaataaaaaaaag
agagaggaagctggagccgttgccatcgaaatgcctgaggtaaatataagtgtaagcatg
gaaaacggagaacaaagggtttttattactccttataagagcttggaatcttctttaatg
ataaaagaaatgatgctgttagcaggcgaagctgccgcccgttttgcatttaaaaataat
attccgtttcagtttataagtcaggaagctcccgaacaaatgaaaaaacttccggaaggg
cttgcaggcgaatataaaaaacggaagggaatgcgcccgcgtaatgtaggaacaattcct
tctatgcatgcagccctgggcattgctatgtacagccaagttacaagtcccttgcgccgt
tacggagatttagtggctcaccaacaacttttaaaatttatcgacggaaaagaagttatg
aaaacggacgattttcttatgagaattgcggccggggatattgcagggcgaaattgtaca
tcggcggaaagagcttcaaaacagcattggactcttatttatcttttacaaaaccctcat
tggcagggcgaagccgtaattttagaaacggtaaaacagagagccagaatttgtattccc
gccataggatacgaaaccgatatgaatttaaaaaaagaactttccgtaaacgaaaaaata
accgtaaaagcggaggatataaatcttccgcatttaaccgtacggttcatacaagtttaa
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