Tunicatimonas pelagia: P0M28_13660
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Entry
P0M28_13660 CDS
T09207
Name
(GenBank) RtcB family protein
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
tpel
Tunicatimonas pelagia
Brite
KEGG Orthology (KO) [BR:
tpel00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
tpel03016
]
P0M28_13660
Enzymes [BR:
tpel01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
P0M28_13660
Transfer RNA biogenesis [BR:
tpel03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
P0M28_13660
Prokaryotic type
tRNA splicing ligases
P0M28_13660
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RtcB
Motif
Other DBs
NCBI-ProteinID:
WKN45999
LinkDB
All DBs
Position
complement(3187997..3189412)
Genome browser
AA seq
471 aa
AA seq
DB search
MATNKLTGKDLRHIGYPEGKIIGLALQAIEDGYKGKNRKVKLDLLKKVYQYPHNYVKDQV
VGAVAQALLTPAEDSGRIALNKQRKDYPIYGEAGIEEGAKHQMNVAMKLPVTVGGALMPD
AHQGYGLPIGGVLATENAVIPYGVGVDIGCRMCMTFYDLPTAHLTERNDQLRKMLIDNTR
FGQATFQRPKDDGVLERPEFQEIKVVRDLKDRAYKQIGSSGGGNHFVEFGVVDVVDTDNE
FGVPVGKYLAVLSHSGSRGLGANIAAHYTRIAKSVCKLPDEAKHLAWLDLDSEAGQEYWR
AMNLAGDYASACHHQIHERLGKALGEAPLAMVENHHNFAWKEQDADGNEIIVHRKGATPA
GKGVLGIIPGSMTAPGFIVRGRGGVASINSASHGAGRVMSRRKAKQSITQQEVTNALKQA
KVTLIGSGLDEAPMAYKDIREVMRQQEDLVDIVGTFQPRIVRMCGPNEVWR
NT seq
1416 nt
NT seq
+upstream
nt +downstream
nt
atggcaacaaataaattgaccggtaaagacttgcgacatataggctaccccgaaggaaaa
attatcgggttggccctgcaagctattgaagatggatacaaaggcaagaaccgaaaagtg
aaactggacttgctgaaaaaagtctaccaatacccgcacaactatgtgaaggatcaggta
gtaggtgccgtggctcaagctttgctcactcctgctgaagactcaggcagaattgcactg
aataagcagcggaaagattatccaatttacggtgaggccggaattgaagaaggagccaag
caccagatgaacgtagcgatgaagcttccggttacagtgggcggagcgttgatgcccgat
gctcaccagggttacgggcttcccattggcggggtgctggcgacagaaaacgcagtgatt
ccctacggcgtgggcgtagacattggttgccgaatgtgcatgactttctatgacctgcca
acagcgcacctaaccgagcggaacgatcaactcagaaagatgctgatcgataacactcgc
tttgggcaggctacgtttcagcgaccgaaagatgatggggtgctggagcgacccgagttt
caggagattaaagtagtgcgggatctaaaagaccgagcctacaagcaaattggttcttcc
ggtggaggtaatcacttcgtagaattcggagtagttgatgtggtggatactgataatgag
tttggcgtacccgtcgggaaatacctagcggtgttgtcgcactcagggtcgcgagggctg
ggtgctaacattgcggcgcactacacccgaattgccaaatcagtgtgcaaactgcccgat
gaggctaaacacctcgcttggctcgatttggattcggaagccggacaagagtactggcga
gcgatgaatctggcgggcgactacgcttcagcctgtcatcaccaaattcacgaacggctt
ggaaaagctctgggcgaagctccgctggcgatggtggaaaaccaccataactttgcctgg
aaagagcaggatgcagatggcaacgagatcatcgtccataggaagggagcaactccagca
ggtaaaggtgtgctgggaattattccgggctccatgactgcccccggttttattgtgcga
ggacgaggtggagtggcatccatcaactcggcttctcacggggccgggcgggtgatgtcg
cggcgaaaggccaagcagtcgattacccagcaagaggtgaccaatgccttgaagcaggcg
aaagtgacgctgattggctccggcctggacgaagccccaatggcttacaaagacatccgg
gaggtaatgcgtcagcaggaagacctggtggatattgttggcacattccaaccccgaatt
gttcgaatgtgcggtcctaatgaagtttggaggtga
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