Tunicatimonas pelagia: P0M28_14220
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Entry
P0M28_14220 CDS
T09207
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
tpel
Tunicatimonas pelagia
Pathway
tpel03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
tpel00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
P0M28_14220 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
tpel03400
]
P0M28_14220 (mfd)
Enzymes [BR:
tpel01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
P0M28_14220 (mfd)
DNA repair and recombination proteins [BR:
tpel03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
P0M28_14220 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
DEAD
Helicase_C
UvrB_inter
CarD_TRCF_RID
ResIII
Cas3-like_C_2
RecG_dom3_C
Motif
Other DBs
NCBI-ProteinID:
WKN46106
LinkDB
All DBs
Position
complement(3323491..3326841)
Genome browser
AA seq
1116 aa
AA seq
DB search
MQPTQFIKQYADDSFIQTLATQLSTAPQAQLKGVTGSLDAVLASALYRINPQLMLFVLSD
QEAAAYFQNDLQNLNPSREIHLFPASYKKPYQLDETENANVLMRAEILNIISNTPTHGHL
IVTYPDALAEKVINQRSLRENTFFIKAGERLDTQFIAELLTTYDFEKSDFVYEPGQFAVR
GGIIDIYSYAHELPYRIELFGDEVESIRTFEITSQLSQEEVNQVSIIPNVQTKLLEEERQ
SFISFLPTDNTQIWWKDIEAAEDVVNRYYVEASENFESLMVESNGTQVVFSPDMLFETKA
SFLESLVPFTQVEFGHRFSFSTNQVFTIKSQPQPSFNKNFELLAANLHENKDRNITNFIV
SDSEQQIERLHKIFDELDSEVAFNSLYTSLREGFVDKTLNVACYTDHQLFDRFHRYKTKG
IRAKSKAITLKELRSLKVGDYVVHIDHGIGRFAGMEKMDMGGREQESIRLVYRDDDLLYV
SVHSLHKISKYSGKEEGPPAISKLGSPEWENKKKRAKRKVQDIAKDLIDLYAKRKSAPGF
TYQPDSFLQAELESSFMFEDTPDQATATEDVKRDMQLSHPMDRLICGDVGFGKTEIAIRA
AFKAVTEGKQVAVLVPTTILAMQHYHTFNNRLADFPVRVDYINRFKSTKNIKEILKEAKA
GEVNILIGTHRIVNKDVEFKDLGLLIVDEEQKFGVKVKERLKEMRVNVDVLTLTATPIPR
TLQFSLMGARDLSIIATPPPNRRPVTTEIHTFNESIIRDAVSFELKRGGQVFFVHNRVGN
IEEVANIILRLVPNARVAVAHGQMDGAKLEKTMLRFIEGEYDVLVSTNIIESGLDIPNAN
TILINNAHMFGLSDLHQMRGRVGRSNRKAFCYLLSPPSSGLTSDARKRLSTLEEYSELGD
GFKVAMRDLDIRGAGNLLGAEQTGFITDLGFEMYHKILDEAVQELKETEFKDLFTRELSE
VVKPLVQDCSIETDLEVLIPEDYVANTTERLRLYSRLDNIKDEEQLQEFKKMLEDRFGEI
PEPVHELMSTVRLRWKAEQLGFEKLTLKNGLMKCYIVGLDNESYFKSETFGKIIQYVQQH
PKRCRIKETKKRPILSIERTENTQQAISTLDDISSL
NT seq
3351 nt
NT seq
+upstream
nt +downstream
nt
gtgcagcccacccaatttattaaacaatacgctgacgatagtttcatacaaacgctagcc
acccaacttagtactgcaccacaagcccagctaaagggagtaacaggtagtttggatgcg
gtgctggcaagtgctttgtaccggataaatccgcaactgatgctgttcgtactttcggat
caggaagctgctgcctactttcagaatgatcttcagaatttaaatccctcgcgagaaatt
cacctatttccggcttcatacaaaaagccctaccagttagatgaaaccgagaatgccaac
gtactaatgcgggccgagattctaaacattatcagtaatactcccactcacgggcattta
attgttacctaccccgatgcgctagccgagaaagtaattaaccagcgttcgcttcgagaa
aatacattctttattaaagcgggcgagcgactagacactcagtttattgcggagttactt
actacctacgattttgagaaaagtgactttgtgtacgaaccagggcagtttgccgtacga
ggcggtatcattgatatttactcctacgcccacgagttaccctaccgaattgaactcttc
ggcgatgaagtagagagcattcgcacctttgaaatcacttctcaactttcgcaagaagaa
gtaaatcaggtgagcattatccctaatgtgcagactaaactgctggaagaagagcggcaa
tcgttcatcagttttttacccaccgataatacccaaatttggtggaaagatatagaggcg
gcggaagatgtagtgaaccgctactacgtagaggccagcgagaactttgaatccctaatg
gtcgagtctaacggaacgcaagtagtttttagcccggatatgctattcgagactaaggct
agctttttagaaagtttggtaccgtttacgcaagtagagtttggtcatcggttctctttt
tctaccaatcaagttttcaccattaaaagtcagccacagccttcgttcaacaaaaatttt
gaattgctagcggctaatctgcacgagaataaggaccgcaacattaccaattttattgtc
tccgattcggagcaacagattgagcgactccacaaaatttttgatgagcttgattctgaa
gtagctttcaactcactgtacacttcgctacgggagggctttgttgataaaaccctgaac
gttgcttgctacaccgaccaccaactttttgaccgttttcatcggtacaaaaccaaaggt
attcgagccaagtcgaaggctattaccctcaaggagctacgttccctcaaagtgggtgac
tacgtagtgcatatcgaccacggcattggtcgttttgcaggaatggagaaaatggatatg
ggcggtcgggagcaggaatctatccgcttggtttatcgcgacgatgatctactgtacgtc
agtgtacattcgctacacaaaatttctaagtacagcgggaaagaagaaggtccgcccgcc
atcagcaaattaggttcccccgagtgggaaaacaaaaagaagcgggcgaagagaaaggtg
caggatattgctaaagacctgattgacctatacgccaaacgtaagtcggctcccggtttt
acctaccagcccgatagcttcttgcaagctgaattagaatcttcgttcatgtttgaagat
actcccgaccaggctactgccaccgaagatgtaaaacgcgatatgcagctaagtcatccc
atggatcgccttatttgcggtgatgtaggttttggaaaaaccgaaatagccattcgagca
gcgtttaaagcggtaactgaaggcaagcaagtggcggtgctggtacccaccactattttg
gctatgcagcactaccatacgtttaataatcgtttggctgattttccggtgcgagtagat
tatatcaaccgctttaagtctaccaaaaacattaaagaaattctgaaggaggcaaaagcc
ggagaagtcaatattctgatcggtacgcaccgcattgtgaacaaagatgttgaatttaag
gatttgggcttactaattgttgacgaagagcaaaagtttggagtgaaggtaaaagagcgg
ttaaaagaaatgcgggtgaacgtcgatgtgctaaccctcaccgccactcccattccccga
accttgcagttttcgctgatgggcgcgcgcgatttgagcatcatcgccactccacctccc
aaccgtcgtccggttactaccgaaattcatactttcaacgaaagcattattcgtgatgcg
gtcagctttgaactgaagcggggcggacaggttttctttgtccataatcgcgtgggcaat
attgaagaagtcgctaacattattttacgactggttcccaacgctcgggtcgccgtagcc
cacggacaaatggacggggcgaagctggaaaaaaccatgctccggtttattgagggcgaa
tacgatgtactagtttccactaatattattgagtcggggctggatattcccaacgccaat
actattttgattaataacgcgcatatgttcggattatccgacctgcaccagatgcggggt
agggtaggccgctcaaaccgtaaagcgttttgctacttgctctctcctccttcttccggc
cttacgtccgatgcgcgcaagcggctttctaccttagaagagtattctgagttaggcgat
ggatttaaagtagctatgcgcgatctggatattcgcggggcgggcaacttgctgggagct
gagcaaactggtttcatcactgatttagggtttgagatgtaccataaaattctggatgaa
gccgttcaggagctaaaagaaacagagtttaaagacctttttactcgcgagttgagtgaa
gtagttaaaccgctcgtccaagattgcagcattgaaactgacctggaagtacttattccc
gaagattacgtggccaatactactgagcgcttgcgcctgtactcccggctggataatatt
aaagatgaagagcagcttcaggaattcaaaaaaatgctagaagatcgcttcggcgaaatt
cccgaacccgttcacgagttgatgtctaccgtacggttacgctggaaggccgaacagcta
ggctttgaaaagcttacactgaaaaatgggttgatgaaatgctacatcgtaggattagat
aatgagtcctacttcaaatcagaaacctttgggaaaattattcagtacgtgcagcagcat
ccgaagcggtgccgtattaaagaaactaaaaagcgaccaatcttgtccatagaaagaacc
gagaatacccaacaagccattagcacactagatgatattagttcactgtag
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