Tunicatimonas pelagia: P0M28_15760
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Entry
P0M28_15760 CDS
T09207
Name
(GenBank) DEAD/DEAH box helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
tpel
Tunicatimonas pelagia
Pathway
tpel03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
tpel00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
P0M28_15760
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tpel03019
]
P0M28_15760
03009 Ribosome biogenesis [BR:
tpel03009
]
P0M28_15760
Enzymes [BR:
tpel01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
P0M28_15760
Messenger RNA biogenesis [BR:
tpel03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
P0M28_15760
Ribosome biogenesis [BR:
tpel03009
]
Prokaryotic type
rRNA helicases
P0M28_15760
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
AAA_22
CMS1
PilB3_C
Motif
Other DBs
NCBI-ProteinID:
WKN40499
LinkDB
All DBs
Position
complement(3690867..3692576)
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AA seq
569 aa
AA seq
DB search
MTFQEMGLRPELLQATEELGFTEPTPIQQQAIPVLISENRDLVALAQTGTGKTAAFGLPL
LHLVSEDASQVQALVLCPTRELCLQITRDLDDLAKHLPEVRVAAVYGGASMDQQIRQLKR
GVQIVVGTPGRVHDLTRRRVLKLDAVERLVLDEADEMLSMGFKEELEAIVDQTPEERQTL
LFSATMPKSIAGRFTNNPAEISVGSRNAGASTVKHVYYMVNARDRYAALKRIADLYPEIY
GIVFCRTRQETKDVAAKLGADGYNADALHGDLSQAQRDYVMGRFRKKQLNMLVATDVAAR
GLDVNDLSHVINYNLPDDIEVYTHRSGRTGRAGRTGTSIAIVHRRETGRIKQIERVAKIS
FERKPVPTGREICEKQLFHLVDRIEHIEVNDEQIDSYLPVIYKKLDWMSREDLIKRFVSV
EFNRFLSYYENAPDLNVKADERKSGRDRERGSRQTERVRERRSRTDFTKFYINVGSKHKM
NPARLMGLINEHTNDSSIRIGKIDIEKNFTMFEIDRQHEAVIEPAFDGATFAGQLALVQK
ASSGGPRKTKQEGNFEKRKKKHRKGKGWA
NT seq
1710 nt
NT seq
+upstream
nt +downstream
nt
atgacttttcaagaaatggggctgcgcccggagttactgcaagccacagaagaactgggc
tttactgagccaactcctatccagcaacaagccattccggtactcatctcggaaaaccgc
gatttagttgctttagcccagactggaaccgggaaaactgccgccttcgggttgccactg
ttacacttagtaagcgaagacgcctcgcaggtgcaggcattggtactttgccctacccgc
gaactttgcttacaaatcacccgcgatctagacgacttggcgaaacacttaccagaggtt
agagtagcagctgtgtacggcggagcgagtatggatcagcagatacgccagttgaaacgg
ggagtgcaaattgttgtaggcacaccgggccgggtacatgacctcactcgccgcagggtg
ctgaagttggacgcggtagagcgattggtgctcgatgaagccgatgagatgctttctatg
ggatttaaagaagagttggaggcaattgttgatcaaacccccgaagagcggcaaacctta
ctattctctgctaccatgcctaagtctattgccggacgttttaccaataacccggcggag
atttcggtaggttctcgcaacgccggagccagtacggtaaagcatgtgtactatatggta
aatgcacgcgatcgctacgctgcccttaagcgcattgctgacctttaccccgaaatttac
ggtattgtattttgccgaacacgtcaggaaacgaaagatgtagctgccaagttaggagcg
gatggctacaacgctgatgccctgcacggtgatttatctcaagcgcagcgcgactacgtg
atggggcgctttcggaagaagcaattgaatatgctcgtagcaactgacgtagcggctcgg
ggcttagacgtgaacgatcttagccatgtcatcaattataatcttcccgacgatattgaa
gtgtatacccaccgtagcggacgaaccggacgagcgggcagaacgggtacatcaatcgct
attgttcaccgaagagaaactgggcggataaaacagattgaacgagtagcgaagatatcc
tttgagcgcaagcctgtgccaaccgggcgagaaatttgcgagaaacagctttttcatctg
gtagatcgtatagaacacattgaagtgaacgacgagcagattgattcttacttaccagtc
atttacaaaaagctcgactggatgagccgggaagatctgatcaaacgttttgtgtcggta
gagtttaatcgatttttatcgtactacgaaaacgcccctgatctcaatgtgaaagccgat
gagcgcaaaagtggccgggatcgtgaacgaggcagtaggcaaaccgaacgagtacgcgag
cgtcgtagccgaaccgattttactaaattttatatcaatgtcggcagcaagcataaaatg
aaccccgctcggctgatgggcttgattaacgagcacaccaacgattcatccatccgcatc
ggtaaaattgatattgagaagaactttactatgtttgaaattgatcgtcagcacgaagcc
gttattgagcccgcctttgatggtgctacttttgccggacaactagctttagtgcaaaag
gccagctctggtggccctcgcaaaaccaagcaggaaggtaactttgagaagaggaaaaag
aagcaccgtaaaggaaaaggttgggcgtaa
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