Tunicatimonas pelagia: P0M28_24750
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Entry
P0M28_24750 CDS
T09207
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
tpel
Tunicatimonas pelagia
Pathway
tpel03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
tpel00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
P0M28_24750 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
tpel03021
]
P0M28_24750 (rpoC)
03400 DNA repair and recombination proteins [BR:
tpel03400
]
P0M28_24750 (rpoC)
Enzymes [BR:
tpel01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
P0M28_24750 (rpoC)
Transcription machinery [BR:
tpel03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
P0M28_24750 (rpoC)
DNA repair and recombination proteins [BR:
tpel03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
P0M28_24750 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
RPOC_hybrid
Motif
Other DBs
NCBI-ProteinID:
WKN42247
LinkDB
All DBs
Position
5784747..5789066
Genome browser
AA seq
1439 aa
AA seq
DB search
MAFKKNKKFSNDFSKVTISLASPESILESSHGEVTQPETINYRTYKPEMGGLFCERIFGP
VKDWECHCGKYKRIRYKGIICDRCGVEVTEKKVRRERMGHIELVVPVAHIWYFRSLPNKI
GYLLGLSTKKLDQIIYYERYVVIQAGVKAEDGISYLDYLTEDEYLDIIDKLPADNQRLDD
NDPNKFIAKMGAEALEMLLAQLKLQELEYSLRHQANTDTSQQRKAEALKRLKVVTAFLDA
RNRIENRPEWMVIKMVPVIPPELRPLVPLDGGRFATSDLNDLYRRVIIRNNRLKRLIDIK
APEVILRNEKRMLQEAVDSLFDNSRKVNAVRSDGNRALKSLSDMLKGKQGRFRQNLLGKR
VDYSGRSVIVVGPELKMHECGLPKDMAAELFKPFIIRKLIERGIVKTVKSAKKIVDRKDP
VVWDILENVLKGHPVLLNRAPTLHRLGIQAFQPKLIEGKAIQLHPLVCTAFNADFDGDQM
AVHVPLGHEAVLEASMLMLSSHNILNPANGAPITVPSQDMVLGLYYVTKGRKHTPEVPIA
GEGLSFYSAEEVIVALNEGQISKHAYIKVRTKVRNEQNELEDKIIETVAGRVVFNELVPE
EVGYVDELLTKKKLQQIIAMVYKIAGVARTAKFLDDIKELGFQMAYKGGLSIGLDDIIVP
NDKLGLIQEAKEEVDSVRNNYFMGLITDNERYNQVIDVWTRVNSRLTNALMKKMEDDQLG
FNSIYMMMHSGARGSREQIRQLGGMRGLMAKPQKNLQGSVGEIIENPILSNFKEGLDVIE
YFISTHGARKGLADTALKTADAGYLTRRLVDVAQDVVIREEDCGTVRGLLVASLKDNEEV
VEPLSERILGRVSVHDIFDPISDELIIESGTEITEELAALVDERGIEEMEIRSPLTCETK
SGICSKCYGRNLSTGYMVQDGESVGVIAAQSIGEPGTQLTLRTFHVGGTASNIAVEATIK
AKFSGKVEFEELRSLKTTDDEGEPKTVVMGRSGEIKIVDEKTGKVFSTYNAPYGSFLRVK
EGDTVEKGDELCYWDPYNAVILSEFEGKVDFEYIEQGITYKEEYDEQTGHREKVITETRD
KTKNPAIVIEPSGSDFERKAYNIPVGAHLAVDIDDKVRAGQVIAKIPRMMSKSRDITGGL
PRVTELFEARNPSNPAVVSEINGAVTYGGIKRGNREIFIESKDGIKKRYLVPLSKHILVQ
DNDFVRAGMPLSDGAITPADILAIKGPTAVQEYLVNEIQEVYRLQGVKINDKHIEVIVSQ
MMQKVEIENEGDTNFLKRQVVDKFSFREENDAILDKKLVVEVGDSTNFKQGMIISSRQLR
DENSSLKRQDKNIVQVRDAQPAVAKPTLQGITQASLGTESFISAASFQETTKVLSEASIR
GKADHLNGLKENVIVGHLIPAGTGMREYKNIIVGSKEEYEALRASRESRVEENSTVETN
NT seq
4320 nt
NT seq
+upstream
nt +downstream
nt
atggcattcaagaaaaataagaagttctccaatgatttctcgaaggtaaccattagcctt
gcttctcctgagtctattttagaaagctcgcacggggaagttacgcagcccgagaccatc
aattaccggacgtacaagccggaaatgggtgggttgttttgtgagcgtattttcggcccg
gtaaaagattgggaatgtcattgcggaaaatataagcgcattcgctacaaaggtattatt
tgcgaccgttgtggagtagaagtgactgagaagaaggtgcgacgagagcgaatggggcat
attgagttggtggtgcccgtagcgcatatttggtacttccgctcgttgccgaacaaaatt
ggctacctgcttggtctttctactaagaaactcgatcagattatctactacgagcgctac
gtggtaatccaagctggagtgaaagctgaagacggaattagctatctggattatctgact
gaggatgaatacctagatatcatcgataagcttccggccgataatcagcgattggacgat
aacgatccgaataagtttatcgctaaaatgggagcggaagccctggagatgctactagcc
cagctaaaactgcaggagctagagtatagtcttcgccatcaggccaacacggatacttcc
cagcaaagaaaagcagaggcactaaagcggttgaaagtagtaacagctttccttgatgcc
cgcaatcgtattgagaaccgtccggagtggatggttattaagatggtgccggttattccg
cctgaactacgtccattagtaccgctcgatggtggtcgctttgccacttccgatttgaac
gatctttaccgtcgggtaattatccgaaacaatcgtctgaagcgactgatcgatattaaa
gcacccgaagtaattcttcgaaacgagaagcgaatgctgcaagaagcggttgactcactc
ttcgacaactctcggaaggtaaacgcagtgcgctccgacggaaatcgggcactgaaatca
ctcagcgatatgctgaaaggtaagcaaggacgtttccgccagaacctactgggtaagcga
gttgactactcgggtcgttcggtgatcgtggtaggtcccgaattgaaaatgcacgaatgc
ggtttgcctaaagatatggcagctgagcttttcaagccgttcatcattcgtaagctcatc
gagcggggaattgtcaaaacggtaaagtcagccaagaaaattgtggatcgtaaagatccg
gtagtttgggatattctggaaaatgtgttgaagggacatccggtgctattgaaccgggct
ccaacgcttcaccgtttgggtatacaagcatttcagcccaagctaattgagggaaaagct
attcagcttcatccgttagtatgtactgccttcaatgctgactttgatggtgaccagatg
gcggtacacgtgccattaggacacgaagcggtactggaggcttctatgctgatgctgtcc
agccataacattttgaacccagccaatggcgcacctataacggttccttcgcaagacatg
gtgcttgggttgtactacgtaaccaaagggcgtaagcacactccggaggtgccaattgca
ggagaaggcctgtctttctacagtgccgaggaggtgattgtagctctcaatgaaggtcag
atttctaagcacgcgtatattaaagtacgaacaaaagttcgtaatgagcagaacgagcta
gaagataaaatcatcgagacggttgctgggcgagtggtattcaatgagctggtgccggaa
gaagtggggtacgtagatgaactcctcacgaagaagaagctacagcaaatcatcgcgatg
gtctataaaattgctggcgtagcccgtacggccaaattcttagatgacatcaaagagtta
ggtttccagatggcctacaagggtgggttatccattgggttagacgatattatcgttccg
aacgataaactagggcttatccaggaagcaaaagaggaagttgattcagttcggaacaac
tactttatggggcttatcaccgataacgagcgttacaatcaggtaattgacgtatggact
cgggtgaactctcgtttgaccaacgccctgatgaagaaaatggaagacgaccagctaggg
ttcaactccatttatatgatgatgcactcgggagctcgcggttctcgggagcagattcgt
cagcttggcggtatgcgagggctaatggctaagccgcagaaaaacctgcaaggttcagtc
ggtgagattattgagaacccaattctttccaacttcaaggaagggctcgacgtaattgag
tactttatctctacacacggagcgcggaaaggtctggctgatacggctttgaaaacagcc
gatgctggttacctaactcgtcgtctggtagatgtagctcaggatgtagtgattcgggaa
gaggactgtggtactgttcgcggattattggtagcttctcttaaagataacgaagaagta
gtagaaccgctatcagagcgtattctggggcgggtgtctgtacacgatatttttgatccg
atttcggacgagcttatcattgagtcgggaacggaaattaccgaagaattagcagccttg
gtggatgaacgaggcattgaagagatggaaattcgctcaccactgacgtgtgaaaccaag
agtggaatttgctcgaaatgctacggaagaaacctttcaacgggctacatggtacaagac
ggtgaatcggttggcgttattgcagctcagtctattggtgaacccggtacgcagttaacg
cttcgtacgttccacgtggggggtacagcttccaacattgcggtagaagctactatcaaa
gcgaagttctccggtaaagtagaatttgaggagctacgctcgctaaaaactaccgacgac
gaaggcgaacctaaaacggtagtaatgggccgctcgggtgaaataaaaattgtagatgag
aaaacaggcaaagtattctcaacctacaatgcaccctacggttccttcctgcgagtgaag
gaaggcgatacggtagagaaaggagacgagctttgctactgggatccgtacaacgcagtg
atcctttcggagtttgaaggaaaagtagacttcgagtacattgaacagggaattacctac
aaagaagaatacgatgagcagacggggcaccgtgagaaggtaattaccgaaacgagggat
aaaacgaagaatccggctatcgttattgaaccttcgggcagtgactttgagcgtaaagct
tacaacattccagtaggagcgcacttagccgtagatattgacgataaagttcgagccgga
caagtaattgccaagattcctcggatgatgagtaagtctcgggatattacaggtggtctg
cctcgggtaactgaactttttgaggcacgtaacccttccaatccggcggtagtaagtgag
atcaacggagccgtaacctacggaggcatcaaacgaggtaatcgggaaatatttattgag
tcgaaagatggaatcaagaaacgatacttagtaccgctttctaagcacattctagttcag
gataatgacttcgttcgggcgggaatgccgttgtctgatggagccattaccccagcggat
attctggcgattaaaggcccaacggcagtacaagaatatttagtgaatgagattcaggaa
gtataccgtttgcaaggagtaaaaatcaacgataagcacattgaggtgattgtaagccaa
atgatgcaaaaagtggagattgagaatgaaggggatacaaacttcttgaagcgacaggta
gtagataaattctcgttccgggaagaaaatgatgctattctagataaaaagcttgtggtg
gaagtaggagactctaccaacttcaagcaaggcatgattatctcttctcgtcagcttcgc
gatgaaaactcttctctgaagcgtcaggacaaaaatatcgtgcaggtacgcgatgctcaa
ccggcggtagccaaacctaccttgcagggaatcactcaggcatcattaggtaccgagagc
tttatctcggcggcttctttccaagaaaccaccaaagtacttagtgaagcttccattcga
ggaaaagctgatcatctgaacggcctgaaagaaaatgtgattgtcggccatctgattcca
gccggaacaggtatgcgagaatacaagaacattattgttggttctaaggaagagtacgaa
gcattgcgcgcttcccgcgaaagtcgcgtggaagaaaatagtacggttgaaaccaactag
DBGET
integrated database retrieval system
