Thermococcus peptonophilus: A0127_07860
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Entry
A0127_07860 CDS
T04728
Name
(GenBank) ribonuclease J
KO
K12574
ribonuclease J [EC:3.1.-.-]
Organism
tpep
Thermococcus peptonophilus
Pathway
tpep03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
tpep00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
A0127_07860
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tpep03019
]
A0127_07860
Messenger RNA biogenesis [BR:
tpep03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
A0127_07860
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GFIT
Motif
Pfam:
RNase_J_b_CASP
RMMBL
Lactamase_B
Lactamase_B_2
Motif
Other DBs
NCBI-ProteinID:
AMQ19085
UniProt:
A0A142CWD3
LinkDB
All DBs
Position
1454934..1456268
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AA seq
444 aa
AA seq
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MIRVYTISGYEEVGKNMTAVGYSDGRKEEVVIIDMGIRLDRVLIHEDVNIQQFPTKELQR
LGAIPDDSILRNKKVVAITFTHGHLDHIGAVGKIAPHYPDVPIYGTPYTIKLAKSEVKSE
QYFEVKNPMYETEFGEIVQVSENLAIEFVRTTHSIPQAAMVVVHTPEGAVVHTGDFKFDN
NNPLGERPDYKRLKELGKEGVKVLIAESTRVAEPTKTPSEAVAQMLLEDFFLYEGMDEKG
LIATTFASHIARLQELIWIANKMGRQAVFVGRSLAKYTGIAKQLGLIKMKGARAVRSPNA
IKKVLAEVSGAREDYLLVVTGHQGEPGAVLTRMANGELYDIGKQDTVVFSAGTIPNPLNR
AQRYVLETKLKMKGVRMIKDLHVSGHASREDHRYLLRMLNPENIVPAHGEFRMLTHYAEL
AEEEGYLIGRDVFVSRNGYTVEIE
NT seq
1335 nt
NT seq
+upstream
nt +downstream
nt
atgattagagtttacacaatcagcggctacgaggaagtcggtaagaacatgaccgccgtc
ggctattctgacggcaggaaagaggaagttgttataattgacatgggcataaggctcgac
cgcgttctcatccacgaggacgttaacatccagcagtttccaacgaaggagctccagagg
ctcggcgcaatacccgatgattcaattctgagaaacaagaaggtcgtggcgataacgttc
acccacggccacctcgaccacattggagcggtcgggaaaatagcaccgcactatccggac
gttccgatatacggcacaccctacacgataaagctggccaagagtgaggtcaagagcgag
cagtacttcgaggtcaagaacccgatgtatgaaactgagttcggcgagatagtccaggtg
agcgagaacctggcgatagagttcgtgaggacaactcactcgatacctcaggcggcgatg
gtggttgtccacactcctgagggggcagttgtccataccggcgactttaaatttgacaat
aacaacccgctcggagagagaccagactacaagcgcctaaaagagctcggcaaggagggc
gttaaggttcttatagctgaatctacccgcgttgccgagccaaccaagacgccgagtgag
gcagttgcccagatgcttttggaagacttcttcctctacgagggaatggacgagaaagga
ttgatagcgaccacatttgccagccatatagcccgtctccaggagctcatctggatagca
aacaagatgggcaggcaggccgtcttcgttggcaggtctctggcgaagtacaccggaata
gccaaacagctcggcctgataaagatgaagggagcgagagcagtcagaagcccgaacgcc
ataaagaaagtcctcgccgaggtatcgggggcgagggaggactacctcctcgttgttacg
ggtcatcagggtgagccgggggctgtcctcacgaggatggcgaacggcgagctctacgac
ataggaaagcaggacacagttgtcttctcagcagggaccataccgaaccctctcaacagg
gcacagcgctacgtccttgagacaaaactcaagatgaagggcgtccggatgataaaggac
ctccacgtctctggacacgcgagcagggaagaccaccgctatctcctcaggatgctcaac
ccagagaacatcgtcccagcgcacggcgagttcaggatgctcactcactacgccgagctt
gccgaggaagaaggctacctgataggcagggacgtcttcgtgtcgaggaacgggtacacg
gttgagattgagtga
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