Thermococcus peptonophilus: A0127_09090
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Entry
A0127_09090 CDS
T04728
Name
(GenBank) RNA-binding protein
KO
K07573
exosome complex component CSL4
Organism
tpep
Thermococcus peptonophilus
Pathway
tpep03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
tpep00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
A0127_09090
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tpep03019
]
A0127_09090
Messenger RNA biogenesis [BR:
tpep03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Core exosome factors
A0127_09090
Prokaryotic type
Archeal mRNA degradation factors
Exosome components
Core exosome
A0127_09090
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ECR1_N
EXOSC1
S1
Auto_anti-p27
OB_RRP5_4th
RRP4_S1
HVO_2753_ZBP
Prok-RING_1
A2L_zn_ribbon
DZR_2
Zn_ribbon_PaaD
Zn_ribbon_3
Zn_ribbon_IS1595
Trm112p
Motif
Other DBs
NCBI-ProteinID:
AMQ19305
UniProt:
A0A142CX03
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All DBs
Position
1681738..1682334
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AA seq
198 aa
AA seq
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MDEKKTVKNGDLVLPGDYLGVIEEFLPGEGVREENGELYATRAGKVRIDPEKMEISVEPV
TDVPPLPRVGDVVIGRVVEVKPQAVIVQIIGIEGRENDREIATSKLAGIHISEVKGGFVE
DITKEFKIGDVIRARVIANEKSPIQLSTNGSDLGVVYALCSRCRTPLIRRGDKLICPRCG
NVETRKLSSLYRKLKVSL
NT seq
597 nt
NT seq
+upstream
nt +downstream
nt
atggatgagaaaaagaccgtgaagaacggtgacctcgtactgcctggggattaccttggt
gtcatagaggagttccttccgggagagggtgtcagagaggagaacggtgagctttacgct
accagagccggtaaagtaaggatagaccccgaaaaaatggagataagcgttgaacccgta
accgacgtcccgccgcttcccagggttggagacgtggttataggtagggtcgttgaggtg
aagcctcaggccgtaatagttcagatcatcggcattgaaggcagggagaacgacagggag
atagcaacttcaaagctggccgggatacacatctccgaggtgaagggaggcttcgttgag
gatattacaaaggaattcaagattggggacgtgataagagcgagggtaatagccaacgag
aagagtccgatacagctaagcacgaatggatccgacctcggtgtcgtctacgccctctgt
tcccgctgcaggacgccgctgataaggcgcggtgataagcttatctgcccgcgctgtggg
aacgtcgagactagaaagctgtcatcactgtatagaaagctgaaggtgtctttatga
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