Treponema peruense: IWA51_06475
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Entry
IWA51_06475 CDS
T07715
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
tper
Treponema peruense
Pathway
tper03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
tper00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
IWA51_06475 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
tper03400
]
IWA51_06475 (mfd)
Enzymes [BR:
tper01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
IWA51_06475 (mfd)
DNA repair and recombination proteins [BR:
tper03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
IWA51_06475 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
DEAD
Helicase_C
CarD_TRCF_RID
UvrB_inter
ResIII
Cas3-like_C_2
UB2H
RecG_dom3_C
Motif
Other DBs
NCBI-ProteinID:
QQA02239
UniProt:
A0A7T3RFR3
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All DBs
Position
complement(1407024..1410752)
Genome browser
AA seq
1242 aa
AA seq
DB search
MHDAVIAAADGTVQSPVQINGLRGSLPGFFVSQFMDRTVLNAIHDQQYSGGGKADVRDMY
IVVSTQKEADECESDLQTITESKFEIHKLPWWGTLPYRPAAKGSSVFGERAGVLSKMACK
NSRSQKPRIFIVPERSFLTPVPPPEYMRSLSISLRKGGEYDIEKLAEQLSALGYTRVPRV
GMKGEFAVRGEVLDFFMPGEQFPHRVVFDFDVIDQIKVFDFESQSSKENIDYLLVYPMKE
VVWTDELTQKLENILDQEDKDGIINDFAGFDEQRRKGRAVVLGTECQTNGSLYTNERSLE
LTNDSLENAFGDFAGVNNLRTVGSTSVHLALTDMSRAQKDHILTELSVARQTEGEELFYG
VLWNRQYSLLDYAGNSSYVFFYDWDRLVNAMRLMENEYSKSYRAARQTIPVLMPAYMLFD
FFSLAKTHERSFAFKSLDGISELGGMENEVQDSEVLGNDYFKSSLHLSSESPQSYFGNIN
YLKERISTLQKEGWNIYVFADNPNQALRINEIIKDYTEPSDTSVFPVRVFPLSISQGFSV
ADEKILVIQENEIFGRKRNAPKSIRKARSKAIDTFVELNPGDYVVHVNYGIGLFKGIERV
KAMGTERDYIKLEYADEEFAFVPIEQVNMVQRYIGSESEHPRLDRIGSKSWSARKAKVQQ
KVEEMAEKLIDLYSKRQASRGYAFPKDTEWNAAFEAAFPYEDTADQFSATQEIKEDMEKP
VPMDRLVCGDVGYGKTEIAMRAAFKAVMGGKQVAFLAPTTILAEQHYENCIERFRNFPVR
IAQLSRFVPPAEQKKIIASLSAGGVDILVGTHRILQKDVKYKDLGLLIIDEEQRFGVKDK
EKLKEMKTNIDCLAMSATPIPRTLHMSMLKIRDMSLLTTPPQNRQPIETAIEEYSDEKVA
MAIRAEVKRGGQVFYLHNRVETLEDTRRKIENLVPEMLVDVAHGQMTSEELDDIFRRFKM
GGFHVLVATTIIENGIDIPNVNTIIIDRADMYGVSQLYQLRGRVGRSDRKAYAYLFYPEN
KALSEVAMKRLQVISDFTELGSGFKIAMKDMEIRGAGNLLGRDQSGEVYAVGFEMYLSLL
NSAIERLSNSNWHAPDEVLLELEYSGFIPDTYIREAETKMEMYKKIAGVQTQADLDSVWD
ELSDRFGPVPDEVASLLNLAKIRIICNRLSISSLKEKRGVVYVEFSDVSKISVNKILKLI
QTSAGRVKLDPAQPNKIILEAKSIDLKSKSDFIKEKLEQLLA
NT seq
3729 nt
NT seq
+upstream
nt +downstream
nt
atgcatgatgcagtaattgcagctgcagacggaacagttcagtcaccggtacagataaac
ggactgcgcggaagccttccgggattttttgtctcgcagtttatggacagaactgtactt
aacgcaatacacgaccagcagtattcgggcggcggaaaagcggatgtcagagatatgtat
attgttgtttccacgcagaaagaagcagatgagtgcgagtcggatcttcagactataacc
gaatcaaaatttgaaatacacaagcttccgtggtggggaacacttccttacaggccggcc
gcaaaaggttcgtctgtttttggtgaacgtgcaggtgttctgtcaaaaatggcatgcaaa
aacagccggtcgcaaaagccgcgcatttttattgtacccgagcgttcttttcttacacct
gttccgccgcctgaatatatgcgttctctgagcataagcttaaggaaaggcggtgaatac
gatatagaaaaacttgccgaacagctgtcggccctgggttatacaagagttcccagagtt
ggaatgaagggtgaatttgccgtacgcggtgaagttctggactttttcatgccgggtgaa
cagttcccgcacagagtcgtatttgactttgatgtgattgaccagattaaagtatttgat
tttgagtcgcagtcttcaaaagaaaacatagattatcttctggtttatcccatgaaggaa
gttgtatggacagatgaacttacccaaaagctcgaaaacatacttgaccaggaagacaaa
gacggaataatcaatgattttgcaggctttgatgaacagcgcagaaagggaagagccgtt
gttctagggacagaatgtcaaacgaacggtagtttatatactaacgaacggtcgttggaa
ttaactaacgatagtttagaaaatgcttttggtgattttgccggtgtaaataacttacga
acagttggtagtacaagcgttcatttggcgcttacagatatgtctcgtgcccaaaaagac
catattcttaccgaactttcggtagcacgccagacagaaggcgaagagttattctacgga
gttctctggaacagacagtattcgcttttggactacgcaggaaactcttcttacgtcttt
ttttatgactgggaccgccttgtaaatgcaatgcgtcttatggaaaacgaatattccaag
tcatacagggcagccagacagacaattccggttcttatgcctgcttacatgctctttgac
tttttctctttggcaaaaacacacgaacgttcgtttgcattcaagagtcttgacggaata
tcagaactcggtggaatggaaaatgaagttcaggattcagaagttctgggcaatgactat
ttcaaaagttcactgcatctttcttctgaatcaccgcagagttatttcggcaacatcaat
tatcttaaggaacgcatttcgacactgcaaaaagaaggatggaatatctatgtttttgca
gacaaccccaatcaggctttaagaataaatgaaattatcaaagactatacagaaccttca
gatacttctgtttttcctgtaagagtttttccgctttccatttcacagggattttctgtt
gccgatgaaaaaattcttgtcattcaggaaaacgaaattttcggacgcaagagaaacgca
ccaaagtcaataagaaaagcccgttccaaggcaatagatacttttgttgaactgaacccc
ggtgattatgttgttcacgttaactacggaataggtttgttcaaaggcattgagcgcgtt
aaggcgatgggaaccgaacgtgactacataaaacttgaatatgccgacgaagaatttgcc
tttgttccgattgagcaggtaaacatggttcagcgctatatcggaagtgaaagcgaacac
ccgaggctggacagaataggttcaaaaagctggagtgcaagaaaggcaaaagttcagcag
aaagtagaggagatggcagaaaagctcattgacctttattcaaaaagacaggcttcacgc
ggatatgcttttccaaaagacactgaatggaacgctgcattcgaggctgcatttccttac
gaagacaccgccgaccagttttctgcaacacaggaaatcaaggaagacatggaaaaaccc
gttccaatggacaggcttgtctgcggcgatgtaggttacggaaagacagaaatagctatg
cgagcagccttcaaggccgtcatgggcggaaaacaggttgcttttcttgcgcctacaaca
attcttgccgaacagcattatgaaaactgcattgaacgcttcagaaattttccggtaaga
atagcacagctttcaagatttgttccgcctgcagaacagaaaaaaattattgcaagtctt
tctgccggaggagtcgatattcttgtcggaacgcacaggattcttcagaaagatgttaag
tacaaggatctggggcttctcataattgatgaggaacagcgctttggtgtaaaagacaag
gaaaaactcaaggaaatgaagacaaacatagactgtcttgccatgagtgcaacacctatc
ccgcgtacacttcacatgagtatgctcaagataagagacatgtcgcttttgacaacaccg
ccccagaaccgtcagcccatagaaactgcaatagaagaatacagcgacgaaaaagttgca
atggcaatccgtgcagaagtaaaaaggggcgggcaggttttttatcttcataaccgtgtc
gaaacacttgaagatacccgcagaaaaatagaaaacctcgttcctgaaatgcttgtagat
gtagcacacggccagatgacaagtgaagaactggatgatattttcagaagattcaagatg
ggcggctttcatgtacttgttgcaactacaataatcgaaaacggaatagatattcccaac
gtaaacacaataatcattgaccgcgcagatatgtacggtgtaagccagctttaccagctc
aggggaagagtaggccgtagcgacagaaaagcctatgcatatctgttctatcccgaaaac
aaggctttgagtgaagttgcaatgaaacgccttcaggtaataagcgattttacagaactg
ggctcgggctttaaaattgccatgaaagatatggaaatacgcggtgcaggaaaccttttg
ggaagagaccagagcggtgaagtttatgccgtcgggttcgaaatgtatctgagtctgctt
aattctgcaatcgagcgtctttcaaacagcaattggcatgcacctgatgaagtccttctt
gaacttgaatattccggttttattccggacacatatatccgtgaagccgaaacaaaaatg
gaaatgtacaaaaaaattgccggcgttcagacacaggccgatcttgattcagtctgggat
gaactttcggacagattcggtcctgttcccgacgaagtggcaagtcttttgaatctggcc
aaaatcagaataatctgcaacaggctttcaataagttcgcttaaagaaaaacgcggtgtt
gtctatgtagaattttctgatgtgtcaaagataagcgtaaataaaatattaaaactcatt
cagacaagcgccggacgtgtaaaactggatcctgcccagcccaacaaaattattcttgaa
gctaagtccatagacctaaagtccaaaagtgactttatcaaagaaaaactggaacagctc
cttgcatga
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