Terrisporobacter petrolearius: TPHSE_04460
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Entry
TPHSE_04460 CDS
T10349
Symbol
rnr
Name
(GenBank) Ribonuclease R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
tpet Terrisporobacter petrolearius
Pathway
tpet03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
tpet00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
TPHSE_04460 (rnr)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tpet03019
]
TPHSE_04460 (rnr)
03016 Transfer RNA biogenesis [BR:
tpet03016
]
TPHSE_04460 (rnr)
Enzymes [BR:
tpet01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
TPHSE_04460 (rnr)
Messenger RNA biogenesis [BR:
tpet03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
TPHSE_04460 (rnr)
Transfer RNA biogenesis [BR:
tpet03016
]
Prokaryotic type
tRNA degradation factors
TPHSE_04460 (rnr)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
CSD2
OB_RNB
S1
OB_Dis3
OB_RNR_1st
S1CSD-TOTE-2
S1_RRP5
RE_LlaMI
Motif
Other DBs
NCBI-ProteinID:
XAM36174
LinkDB
All DBs
Position
407366..409525
Genome browser
AA seq
719 aa
AA seq
DB search
MTDKLKESLLGLISDNHYNPLKKEELALIFNIHPAEMPMFYNFLDELEEDGYIVRTKKGR
IMSPNQMGLFVGKFVSHRKGYGFVESDEEFKQDLFIPKDDINGALHNDRVMAEVVTPATD
DRRAEGKVIKIIKREVTRVVGLFQENKSFGFVVPDDKKFNQDIFIPKRVFSGAKNDDKVV
CEITVWPQENRKPEGKIIEVLGQKGERGVEIDSIIRAHGLPEEFPKKVIEEANYVADQDL
GDEMGRRVDLRDLNIFTIDGEDAKDLDDAISIEVLPNGNYKLGVHIADVTHYVKEKNKLD
KEALKRATSVYLVDKVIPMLPKQLSNGVCSLNPFEDKLTLSCIMEIDSNGKVVNSEIAET
VINSKARMTYTEVSDILEKDDEKLKKTFAPQVDDFIKAEKLARILMERRRIRGAIDFDFP
EAKIILNGNGEVADIKHYERRISNKMIEEFMLIANETVAEHFYWLQLPFVYRIHETPSAE
KMEDLKKFIATFGYTIKGDLENVHPKEIQGIVEKIKGTKEEESISTIALRSMKQAKYSPQ
CVGHFGLAAKYYCHFTSPIRRYPDLQIHRIIKEQLNNKINNKRQEQLAHIVEYASTQSSE
RERAAELAERDVHDYYKACYMADKVGQEFDGTVSSVTSFGMFIELENTVEGLIRLANMRD
DYYIYNQETYTIMGERTHKTFKIGDTVRIKVDNVNVDFREIDFALVSKLEESHIEEDLK
NT seq
2160 nt
NT seq
+upstream
nt +downstream
nt
atgacagataaattaaaagaatcattactaggcctaattagtgataaccattacaatcct
cttaaaaaggaagaattagcgctgatttttaatatacacccagcagaaatgccaatgttc
tataactttttagacgaattagaagaagacggttacatagttagaacaaaaaaaggaaga
atcatgtctccaaatcaaatgggactatttgtggggaaatttgtttctcacagaaaaggt
tatggatttgttgagtctgacgaagaatttaaacaagatttatttattccaaaagacgat
ataaatggagcacttcacaatgatagagttatggcagaggttgtaacgcctgctacagat
gacagaagagctgaaggaaaagttattaaaataataaaaagagaagtaactagagttgtt
ggtttattccaagaaaacaagagctttggttttgttgtgcctgacgacaagaaatttaac
caagatatatttataccaaagagagttttctctggagcaaaaaatgacgacaaagtagtt
tgtgaaattacagtttggccacaagaaaacagaaagccagaaggtaaaataatagaagta
cttggccaaaagggtgaaagaggagtagaaattgactcaataattagagctcatggactt
ccagaagaattccctaaaaaagtcatagaggaagctaactatgttgctgaccaagattta
ggcgatgagatgggaagaagagttgacttgagagatcttaacatattcacaatagatggt
gaagatgctaaagacctggatgatgctatttctatagaagtattgccaaatggtaactac
aaactaggagtacatattgccgatgttactcactatgtaaaagaaaagaacaagttagac
aaagaagctttaaaaagagccacatctgtttacttagtagataaagtaataccaatgtta
ccaaaacaattatcaaacggtgtttgttcactaaatccatttgaagataagttaacttta
tcttgcataatggaaattgatagtaatggtaaagttgttaattctgaaattgctgaaaca
gttattaactcaaaagctagaatgacttacacagaagtatcagacatactagaaaaagac
gatgaaaaactaaagaaaacattcgcgcctcaagtggatgattttataaaagctgaaaaa
ctagctagaattttaatggaaagaagaagaataagaggagcaatagactttgatttccca
gaagccaaaataatattaaatggtaatggtgaagttgctgatataaaacactacgaaaga
agaatatcaaacaaaatgatagaagagttcatgcttatagctaacgaaactgtggcagag
catttctattggttacagctaccttttgtttatagaatacatgagactccatcagcagaa
aagatggaagaccttaagaaatttatagctacatttggatacactataaaaggtgactta
gaaaatgttcatccaaaagaaatccaaggaatagtggaaaaaataaaaggaactaaggaa
gaagaatctataagtacaatagctctacgttctatgaaacaagctaaatattcaccacaa
tgcgtaggtcactttgggctggcagcaaaatactactgtcactttacttctccaataaga
agatacccagacttacaaattcatagaataataaaagagcaattaaacaataaaattaat
aataagagacaagaacaactagctcatatagttgaatatgcatctactcaatcatcagaa
agagaaagagctgcagaacttgccgaaagagacgttcacgactactacaaagcatgctat
atggctgacaaagttggtcaagaatttgacggtactgtatcaagtgtaacttcatttggt
atgtttatagaattagaaaatacagtagaaggtcttataagacttgctaatatgagagat
gattattatatttataatcaagaaacttacacaatcatgggtgagagaactcacaaaaca
tttaagattggtgatactgtaagaataaaagttgacaatgtaaatgtggactttagagaa
atagattttgcacttgtatctaagttagaagaaagccatattgaagaagatttaaaataa
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