Terrisporobacter petrolearius: TPHSE_23650
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Entry
TPHSE_23650 CDS
T10349
Symbol
dbpA_3
Name
(GenBank) ATP-dependent RNA helicase DbpA
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
tpet Terrisporobacter petrolearius
Pathway
tpet03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
tpet00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
TPHSE_23650 (dbpA_3)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tpet03019
]
TPHSE_23650 (dbpA_3)
03400 DNA repair and recombination proteins [BR:
tpet03400
]
TPHSE_23650 (dbpA_3)
Enzymes [BR:
tpet01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
TPHSE_23650 (dbpA_3)
Messenger RNA biogenesis [BR:
tpet03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
TPHSE_23650 (dbpA_3)
DNA repair and recombination proteins [BR:
tpet03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
TPHSE_23650 (dbpA_3)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HRDC
DEAD
RQC
Helicase_C
RecQ_Zn_bind
HTH_40
ResIII
Helicase_Sgs1
Helicase_C_4
TelK_muzzle
Motif
Other DBs
NCBI-ProteinID:
XAM38081
LinkDB
All DBs
Position
complement(2375373..2377850)
Genome browser
AA seq
825 aa
AA seq
DB search
MYKKPIEILEKYFGYKEFRKGQEEIINSILNKKDVVAIMPTGGGKSLCYQIPALILDGIT
IVISPLISLMKDQVDTLNSINIKSTYINSSLSDNAIKNILNGICNEEYKIIYVAPERLDN
YDFLNVIKRTNISQIAIDEAHCISQWGHDFRKSYTKISHFICDLEKRPIVTSFTATASTK
VKEDIIKNLNLQDYKEFITGFNRDNLEINIVKNCNKKEYILNYIEKNKDNSGIVYAATRK
SVEAIYESLKKRNYSVVKYHGGLNNEERQHYQEQFVKDEKNIIIATNAFGMGIDKSNIRW
ILHYNMPQSVENYYQEIGRAGRDGQKSKCTLLFSPQDIQTQKLLIDSGIPNMERKQSHYT
KLQQIIDLVYSNDCYRKSILNYFGEEFENKCDNCSNCLNRGIMVDKSEDAMKVISCIIRM
KRSYGINMIVDVLRGSKNKKVINLGFNSLSTYGIMKNYKSEDLKIFINTLISHGYLDMVE
SVSNNTSFATIRINNMSKDVIKSNEKVMLYEISSQEDEKEVNHLYDKLKEIRFIIAKTNN
IAPYMIFSDSTLMEMSKKYPTTKEEMLDISGVGEIKFDKYGEMFIEEIKKYTDENNIKIS
KTNEENSNLKQYDEFLYVNSNTELYNRLKELRAFYAKKENTIFYKILSKNTLKEISGRYP
VSEKELLDISGIGSVKFKKYGEDIIKVVKEYLEEKNMNPVWQEKKKLNIVIDGDNRKNNE
IALDLLNQGKDLNDVSLEVEVSPATLLTYVNDYIIEGNTLNFDLELCEYYNENEKNKILK
AIDECKSQSLNLIKKILPSSIKYESIMAVIIENNLNLSNKKKELC
NT seq
2478 nt
NT seq
+upstream
nt +downstream
nt
atgtataaaaaacctatagaaatactggaaaagtattttggatataaagaatttagaaaa
ggtcaagaagagataattaactctatactaaataaaaaagatgtggtagctataatgcca
acaggtggtggaaagtcattatgttaccaaataccggcccttatattagatggtattaca
atagttatatcaccattaatatcattaatgaaagatcaagtagacactttaaactcaatt
aacataaaatccacatatataaatagttctttatcagacaatgcaataaaaaatatatta
aatggcatatgtaatgaggaatataagattatatatgttgccccagaaagattagataat
tatgattttctaaatgttattaaaagaacaaatataagtcaaattgcaatagatgaggct
cactgtatttcacaatggggtcatgattttagaaaaagttatactaaaatatcacatttt
atttgtgacttagaaaaaagaccaatagttacttcctttactgctactgcatctactaaa
gtaaaagaagatataataaagaatttaaatctacaagattacaaggagtttattacagga
tttaatagagataatttggaaataaacatagttaaaaactgtaataaaaaagaatatata
ttaaattatattgaaaaaaataaagacaatagtggaatagtatatgctgcgactagaaaa
tctgtagaggccatatatgaaagtttaaaaaaaagaaattattctgttgtgaaatatcat
ggtggtttaaacaatgaagaaagacagcactatcaagagcaatttgtaaaggatgaaaaa
aatataatcatagcaacaaatgcctttggaatgggtattgataaaagtaatattagatgg
attctccattataatatgccgcaaagtgtagaaaattattatcaagagattggtagagct
ggaagggatggacaaaaaagtaaatgtaccttattattttcaccacaagatattcagaca
caaaaactacttattgattctggcatacctaatatggaaagaaaacaaagtcactataca
aaattacaacagataatagatttagtttatagcaatgattgttatagaaaaagtatttta
aattattttggagaagagtttgaaaataaatgtgacaactgtagtaattgtttaaataga
ggtattatggttgataagagtgaggatgctatgaaggtaatctcatgtattattagaatg
aaaagaagttatggaataaatatgattgtggacgtacttagaggatctaagaacaaaaaa
gtaattaatttaggttttaatagtttatctacatatggtattatgaaaaattataaaagt
gaagatttaaaaatatttattaacactttaatctctcatggttacttagatatggtagaa
agtgtttcaaataatacttcttttgcaactataagaattaacaatatgtcaaaagatgta
attaagagtaatgaaaaagtaatgttatatgaaatttcttcacaagaagatgaaaaagaa
gttaatcacttatatgataaattgaaagagataagatttattatagctaagacaaataat
attgcaccgtatatgattttttcagattctacgctaatggaaatgagcaagaagtatcca
acaaccaaagaagaaatgctagatatatctggtgtaggagaaattaagtttgataaatat
ggtgaaatgtttattgaagaaataaaaaaatatacagatgaaaataatataaaaataagt
aagacaaatgaagaaaatagtaatttaaaacaatacgacgaatttttatatgtaaatagc
aacacagaactttataacagacttaaagagcttcgtgctttttatgcaaagaaagaaaat
actattttctataaaatattgtctaaaaatacattaaaagaaattagtggaagatatcct
gttagtgaaaaagagctgttagatattagtggaataggatcagtaaaatttaaaaaatat
ggtgaagatattattaaagtggtaaaggaatacttagaagaaaaaaatatgaatcctgtt
tggcaagaaaaaaagaaacttaatatagttatagacggagataatcgcaaaaataacgaa
atagcactagatcttcttaatcaaggtaaagacctaaatgatgtaagtttagaagttgaa
gtatctcctgcaactttactaacttatgttaatgactatattatagaaggtaatacttta
aactttgatttagaattatgtgaatactacaatgaaaatgaaaaaaataaaatattaaaa
gctatagatgagtgtaaaagccaaagtttaaacttaatcaaaaaaatacttccatccagc
attaaatatgaaagtattatggcggtaataattgaaaataatttgaatttgtcaaataaa
aagaaggaattatgttaa
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