Terrisporobacter petrolearius: TPHSE_28760
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Entry
TPHSE_28760 CDS
T10349
Symbol
rnjA_1
Name
(GenBank) Ribonuclease J1
KO
K12574
ribonuclease J [EC:3.1.-.-]
Organism
tpet Terrisporobacter petrolearius
Pathway
tpet03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
tpet00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
TPHSE_28760 (rnjA_1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tpet03019
]
TPHSE_28760 (rnjA_1)
Messenger RNA biogenesis [BR:
tpet03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
TPHSE_28760 (rnjA_1)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_J_b_CASP
RNase_J_C
Lactamase_B
RMMBL
Lactamase_B_2
Anti-Pycsar_Apyc1
DUF7600
eIF-1a
Motif
Other DBs
NCBI-ProteinID:
XAM38592
LinkDB
All DBs
Position
complement(2892773..2894449)
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AA seq
558 aa
AA seq
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MQLFKKNTNKVKVMALGGLNEIGKNMTVIEYKDEIVVIDAGLSFPEDEMLGVDIVIPDIT
YLLKNKDKVKGIFITHGHEDHIGALPYILKKIDVPVYGTRLSIGLIEVKLKEHKLNNVKL
NVVTPKQIIKLKNISVEFIKNNHSIPGSCSLAVHTEQGVIFHTGDFKIDLTPIDGDVMDI
HRICELGSAGVLLMLADSTNVEKPGFTMSERTVGAGLDDLFRKANGSRIIVSTFASNIHR
LQQIINTAVKFNRKVAVSGRSMVNVIGVAKELGYLEMEDDTLVDLNDLSKYDDKELVIIT
TGTQGEPMSALARMSSSEHKKVEIKKGDLVIISAHPIPGNEKLISKVINLLFERGARVVY
NDIADIHVSGHAAQEDLKLINRMVKPKFFMPVHGEYRMLKRHAELANELGMPDQNVFVMQ
TGQVLELDRNSAKVTATVPTGNVLVDGLGVGDVGNIVLRDRKHLSEDGLMIVVVTISKED
GKVLAGPDIISRGFVYVRESEDLMDGAKKVIKDVLTECEEKNIKEWAYLKNNIKENLKEY
LYIKTKRNPMILPIIMEV
NT seq
1677 nt
NT seq
+upstream
nt +downstream
nt
atgcaattgtttaagaaaaacaccaacaaggttaaagtaatggctttaggtggtcttaac
gagataggcaaaaacatgaccgtaatagagtataaggatgagattgttgtaatagatgcg
gggttaagttttccagaagatgaaatgttaggtgttgacatagttatacctgatataact
tatttactaaaaaataaggataaggtaaaaggtatatttataacacatggacatgaagat
catattggagctcttccatatatacttaaaaaaatcgatgtacctgtgtacggaactaga
cttagtattggactaatcgaggttaaattaaaagaacataaacttaataatgtaaaatta
aatgttgttactcctaaacaaataattaagcttaaaaatattagtgtagaatttataaaa
aataaccatagtataccagggtcttgttcgctggctgtacacacagagcaaggggttatt
ttccatacaggagactttaagattgatcttacaccaatagatggagatgttatggatatt
cacagaatatgtgagcttggaagtgcgggagttcttttaatgttagcggatagtacaaac
gtggaaaaaccagggtttactatgtctgaaagaacagtaggagcaggtcttgatgattta
tttagaaaggcgaatgggagtagaattatagtatctacttttgcgtcaaatattcataga
ttacaacaaataataaatacggctgttaaatttaatagaaaagttgctgtctcaggaaga
tcaatggttaatgtaataggtgttgctaaagaacttggctatttagagatggaagacgat
acattagttgacttaaatgacctatctaaatatgatgacaaagaattagtaattataact
acaggaacacagggagaaccgatgtcggctcttgctagaatgtcaagtagcgaacacaaa
aaagtagaaattaaaaaaggagatttagtaataatttcagctcatccaataccaggaaat
gaaaagctaatctcaaaagtgataaatcttttatttgaaagaggagcgagagttgtttac
aacgatatagctgatatacacgtatcaggtcatgctgctcaagaagatttaaaacttata
aacagaatggttaagccaaaattcttcatgccagttcatggagaatatagaatgttaaaa
cgccatgcagaattagctaatgagcttggtatgccagaccaaaatgtatttgtgatgcaa
actggccaagttttagaattagatagaaactctgccaaagttactgctacagtaccgaca
ggaaatgtacttgtcgatggacttggagtaggagatgtaggaaacatagttctaagagat
agaaaacatttatctgaagatggacttatgatagtagttgttactatatctaaagaagat
ggtaaagtacttgctgggccggacattatatctagaggatttgtttatgttagggaatca
gaggatttaatggatggagctaagaaagtaataaaagatgttttaactgaatgtgaagaa
aagaatataaaagaatgggcatatttaaaaaataatattaaagaaaacttaaaggaatat
ttatatataaaaactaagagaaatccaatgatattaccaataatcatggaagtataa
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