Terrisporobacter petrolearius: TPHSE_37130
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Entry
TPHSE_37130 CDS
T10349
Symbol
yjcD
Name
(GenBank) Putative ATP-dependent DNA helicase YjcD
KO
K03657
ATP-dependent DNA helicase UvrD/PcrA [EC:
5.6.2.4
]
Organism
tpet Terrisporobacter petrolearius
Pathway
tpet03420
Nucleotide excision repair
tpet03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
tpet00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
TPHSE_37130 (yjcD)
03430 Mismatch repair
TPHSE_37130 (yjcD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
tpet03400
]
TPHSE_37130 (yjcD)
Enzymes [BR:
tpet01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
TPHSE_37130 (yjcD)
DNA repair and recombination proteins [BR:
tpet03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
TPHSE_37130 (yjcD)
MMR (mismatch excision repair)
Other MMR factors
TPHSE_37130 (yjcD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
UvrD_C_2
Viral_helicase1
DEAD
AAA_11
AAA_12
AAA_30
PcrA_UvrD_tudor
AAA_14
LAMB4
Motif
Other DBs
NCBI-ProteinID:
XAM39423
LinkDB
All DBs
Position
complement(3793494..3795536)
Genome browser
AA seq
680 aa
AA seq
DB search
MIDKDKLNENQRKAVEHVEGPCMVLAGPGSGKTRVITYRIANMIMNKNIPPTRILAISFT
KNSSMEMRNRALQICKDSRINKVTFGTFHAIFYKILRYFGKYEMNSILDEKTKRNTIRGI
LKNLKVENGEDDETVGQVINEISYVKNELMDKQDFESEILTKDEFINTYNMYEEYKEQVK
KIDFDDMLLRTYYLLNQNKQALDMVRQVYKYILVDEFQDINRVQFEVLKLMSNPNNNIFV
VGDEDQSIYGFRGSRPDFLLQFEEYFKGTEKILLDINYRSKKEIIDVSNKLIEKNMSRYD
KTIKCNQGEGAIVNYIKPKDSEDEAIQIGKEILEEIKKDYVEYSDFAVIYRTNIQSRALV
DVFMDMRIPFTIKDSIVTIYDHWAARDILSYLKIAVKKHSNEDWIRIINKPFRYISRDNL
NQIKEDKDFVNALITKCNLHPKQVKTINDLDIDISYLKHQCPQDAISYIRTTLDYDKYIL
DYCVNRKIKTNGLIEILNEIESSASNFETIEEYLDHIEKVKAELEQNQYKKELDGVVFTT
MHSAKGLEFRYVYIIGINEGTIPHEKSYDVDDDDKKVDQIEEERRLMYVGMTRAEESLTL
SSPLNKYGKKAYESRFLNDIKNPTKEEMKSVKIGDKLYHKSFGNGRIVGKDGDMVQVKFK
NEEKTLDYKLCMRNNIIKQL
NT seq
2043 nt
NT seq
+upstream
nt +downstream
nt
atgattgataaagataaattaaacgaaaatcaaagaaaagcagtggagcatgtagaagga
ccatgcatggtactggctgggcctgggtcaggtaaaacaagagttataacttatagaata
gccaatatgataatgaataaaaatattcctccaacaaggatattagcaataagtttcaca
aagaactcttccatggaaatgagaaacagagctcttcaaatttgcaaggatagtagaata
aataaagttacttttggaacatttcatgctattttttataaaattttaagatattttgga
aaatacgagatgaatagtattcttgatgaaaaaacaaaaagaaatactattagaggcata
cttaaaaatctaaaagtagaaaatggcgaagatgatgaaacagttggacaagttataaat
gaaatttcttatgttaaaaatgagctaatggataagcaagattttgaatcagaaatttta
acaaaagatgaatttataaatacttacaatatgtacgaagaatataaggagcaagttaaa
aaaatagattttgatgatatgttgctgagaacttattatttgttgaaccaaaataaacag
gctttagatatggttagacaagtttataaatatattttagtagatgagttccaggatata
aatagagtgcaatttgaagtactaaaactaatgtcaaatccaaataacaatatatttgtt
gtaggagatgaagaccaaagtatatatggatttagaggttctagacctgattttttatta
cagtttgaagagtattttaaaggaacagaaaagattttgttagatattaattatagatct
aaaaaagaaataattgatgtatctaataaattaatagaaaaaaatatgagtagatatgat
aaaactataaaatgcaatcaaggtgaaggtgcaatagtaaattatattaaaccaaaggat
tcagaagatgaggcaattcaaattggaaaagaaattttagaagaaattaaaaaggattat
gtagaatatagtgattttgcagtgatctacaggacaaatattcaatctagagctcttgta
gatgtattcatggacatgaggataccttttactataaaagactcaatagtgacaatatac
gaccactgggcagcaagagatatattgtcttacttaaaaattgctgtaaaaaaacatagc
aatgaggattggataagaattattaataaaccttttagatatatatctagagataatttg
aatcaaattaaagaagacaaagactttgtgaatgctttaataacaaaatgcaatcttcat
ccaaagcaagtgaaaactataaatgatttggatattgatataagttatttaaaacatcaa
tgtccacaagatgccatatcatatataagaacaaccctagattatgataagtatatttta
gattattgtgttaatagaaaaataaagacaaatggattaatagaaattttgaatgagata
gaaagttctgcatctaactttgaaactattgaagaatatttagatcatatagaaaaagtt
aaggcagaattggagcaaaatcagtataaaaaggaattagatggagtagtatttactacc
atgcatagcgccaagggattagagttcagatatgtttatattataggaattaatgaagga
acaattcctcatgaaaaatcttatgatgttgatgatgatgacaaaaaggttgaccaaata
gaagaagaaagaaggcttatgtatgtaggcatgactcgtgcagaagaaagtttaacctta
agttctcccttaaataaatacggcaaaaaagcttatgaatcaagatttttgaatgatata
aaaaaccccacaaaagaagagatgaaaagtgttaaaattggggataaactttatcacaaa
agttttggaaatggaagaattgtgggtaaagatggggatatggtacaagttaagtttaaa
aatgaagaaaaaactttagattataaattatgcatgagaaataatattataaagcaacta
taa
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