Tetrapisispora phaffii: TPHA_0A01010
Help
Entry
TPHA_0A01010 CDS
T02235
Symbol
TPHA0A01010
Name
(RefSeq) hypothetical protein
KO
K03144
transcription initiation factor TFIIH subunit 4
Organism
tpf
Tetrapisispora phaffii
Pathway
tpf03022
Basal transcription factors
tpf03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
tpf00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
TPHA_0A01010 (TPHA0A01010)
09124 Replication and repair
03420 Nucleotide excision repair
TPHA_0A01010 (TPHA0A01010)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
tpf03021
]
TPHA_0A01010 (TPHA0A01010)
03400 DNA repair and recombination proteins [BR:
tpf03400
]
TPHA_0A01010 (TPHA0A01010)
Transcription machinery [BR:
tpf03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIH
TPHA_0A01010 (TPHA0A01010)
DNA repair and recombination proteins [BR:
tpf03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TFIIH complex
TPHA_0A01010 (TPHA0A01010)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Tfb2
Tfb2_C
Helicase_C_3
Cas9_C_2
bPH_7
Motif
Other DBs
NCBI-GeneID:
11532655
NCBI-ProteinID:
XP_003683620
UniProt:
G8BMQ8
LinkDB
All DBs
Position
1:complement(196292..197806)
Genome browser
AA seq
504 aa
AA seq
DB search
MSAITSKKSVNDYLEELPQQVQSKLYESPAACLSIYRLLPHMAKFFIMSMVFNDNEISIR
DLDRWVNSNGKLQFQDAIKSMKSLHILIPGKEQGSMFVNLNSTFRTSFRNALTGGEVNNS
FGNIIDKIDDLVDSSVLLEYAKDKWETILHFMVGTPLIKMPSDNVLNLLKHSKLMEELES
SGEFKITNDGFQFLLQDVNSQIWTLLLQYLKIAEALHMNPVDILNFIFMLGSLEFGKAYS
VEGLSDTQKKMLKDMRDYGLIFQKTSNATVFYPTTLATQLTSDSSTVRSASGAIDSLLSQ
TKEANNNDSQNLGTDTDDLVGNQSVEVGALVVETNFKLYSYSNSPLQIAILSLFVHLRTR
FSNMVTGQITRESIRNALANGVTADQIIAYLQSHAHPQMRRLAETTLKKKLELDPNTKDQ
LQILPPTVVDQIKLWQLELDRILSYDGSLYSDFDNNQEYNMLYNYAKDIGVLLWKNDRKR
KFFVSKEGNSQVLDFAKRKLKKKQ
NT seq
1515 nt
NT seq
+upstream
nt +downstream
nt
atgagtgctatcacttcaaaaaaatcggttaacgattatttagaagaacttcctcaacag
gtacaaagtaaattatacgaatccccagcggcatgtctgtctatttatagactgttaccg
catatggccaagtttttcattatgtcgatggtattcaatgacaatgaaatatcgattcgt
gatttggacaggtgggtgaactctaatggtaaattgcaattccaggatgctattaagtct
atgaagtcattacatatcttgattcccggtaaagagcaaggttcgatgtttgtcaatttg
aattcgacttttaggacaagttttagaaatgcattgactggaggtgaagtgaacaattcg
ttcggtaatattattgacaagatagacgatctggtagattctagtgtgctgttggagtac
gctaaagataaatgggaaacaattttgcatttcatggtgggtacgccattgatcaagatg
ccatccgataatgtattaaatctattgaaacatagtaaactgatggaagaattagagagt
agcggtgaatttaagatcacgaatgatgggttccaatttcttctgcaagatgtcaactcg
caaatctggacgttgctattgcaatacctaaaaattgcagaggcgttgcatatgaacccc
gttgatattctaaatttcatattcatgctaggttctttagagtttgggaaagcgtacagt
gttgaaggattgagtgacacacagaagaagatgctgaaagacatgagagattacggttta
attttccaaaagacctccaatgctactgtattttatccaacaaccttagccacacaactg
acctcggactccagtactgtgcggagtgcctccggtgccatcgacagtctgttatcgcag
acgaaggaagccaacaacaacgactcgcaaaacctcggaaccgacaccgacgacctagtg
gggaaccaaagcgtcgaagtcggcgcactggtggtggagacaaacttcaaactgtactcg
tactcaaactcacctctgcagattgcgatcttgagcttgtttgtgcacttgcgcacgagg
ttttccaacatggtcaccggccaaattacccgtgagtccatcagaaacgcgcttgccaac
ggggtgacggcggaccagatcatcgcgtacttgcaatcgcacgcgcacccacagatgcgt
agattagcagagacgacgttgaagaagaagctggaactggacccaaacacaaaagaccaa
ctccaaatccttccccccaccgtagtggatcaaatcaagctatggcaactggaattggac
agaatactgagctacgacggctcgctgtactcggacttcgacaacaaccaagaatacaac
atgctatacaactatgccaaggacatcggcgtactgttatggaagaacgatagaaaacgt
aaattctttgtctcgaaagaaggtaattcgcaagtgctggactttgcaaagagaaaacta
aagaagaaacagtga
DBGET
integrated database retrieval system
