Tetrapisispora phaffii: TPHA_0C02020
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Entry
TPHA_0C02020 CDS
T02235
Symbol
TPHA0C02020
Name
(RefSeq) hypothetical protein
KO
K14400
pre-mRNA cleavage complex 2 protein Pcf11
Organism
tpf
Tetrapisispora phaffii
Pathway
tpf03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
tpf00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
TPHA_0C02020 (TPHA0C02020)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
tpf03021
]
TPHA_0C02020 (TPHA0C02020)
03019 Messenger RNA biogenesis [BR:
tpf03019
]
TPHA_0C02020 (TPHA0C02020)
Transcription machinery [BR:
tpf03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
TPHA_0C02020 (TPHA0C02020)
Messenger RNA biogenesis [BR:
tpf03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Pre-mRNA cleavage factor IIm (CFIIm)
TPHA_0C02020 (TPHA0C02020)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Pcf11_C
Pfc11_Rna14-15-ID
Pfc11_Clp1_ID
CID
zf_PCFS4
VHS
Motif
Other DBs
NCBI-GeneID:
11534090
NCBI-ProteinID:
XP_003684791
UniProt:
G8BRI1
LinkDB
All DBs
Position
3:453212..455203
Genome browser
AA seq
663 aa
AA seq
DB search
MDRDQEAIVKDFTSILDELTFNSRPIITTLTKMAEENISLAQYFVDALESRVEKCVPKQK
LYAFYTIDSICKNAGSPYTIYFSRNLYNLYKKAYLLVDNQVRTKLINMFKTWIQPIESTG
LPIFDNVELDKIENFLIKASALHHKNFTKLLPEPTVPLLLRDIDKLTTLTNERLTKQKNS
DSNDEKEIEKLNMKILVLSQLKQELQKGKLTKVALKQVQVQLLQVFAQDQQVLQERIRQE
QLQQEQLQQRQRTEQLQLQQLSHHQNAAINQQFQIKNDHNPLFGNSLNLNPQGFSTLFNN
SNFIPMNQNMDDNNTMGGMNLNNIIEPANISNIEKQNKLNKMHSLFESLKAEKLVFQPKE
QSIITLNAKLNIDDGKLINNSGRAKSETDLTRLPSIEFLSNIISDCKAYFSTVNIDIVNT
PSLNISQDFILGENKIVENNLINTLYRAKPKKCTLCGKRFGNTLDERRLQSDHLDWHFRI
NKRIKGSENTLSNITATNSSSNTTQKNIQSRNWYLHDSQWIIFKDKEIVSTSRSDHSENN
MTVVNLDFNTNMNSQKNNNINNADRNLSGNESNKFVKIDEGLLSKKYVIVPESVEDMSFK
CPVCKEIVAATYDEELGEWIWKGCMEYKGKYFHATCYYESAKNKNTSIGLELDMEKLKNL
ITD
NT seq
1992 nt
NT seq
+upstream
nt +downstream
nt
atggatcgtgatcaagaggctattgtaaaggactttactagcattctcgatgagttgact
ttcaattcaagaccgattatcactacgttgacaaagatggcagaagaaaatatttcttta
gctcaatattttgtggatgctttggaatcgagagttgagaaatgtgtacccaaacagaag
ttgtacgctttttatacaattgattcaatttgtaaaaatgctggtagtccctatacaatc
tattttagtagaaatttgtataatttatataagaaagcttatcttttagttgataatcaa
gttagaacgaaattaatcaatatgtttaaaacttggatacaaccaattgaaagcacagga
ttaccaatattcgataatgttgaattagataaaattgagaacttcctaataaaagcaagt
gcattgcatcataaaaattttacaaaattactacctgaaccaactgtacctttattatta
agggatattgataaattaactacattaacaaatgagagattaacaaaacagaaaaatagt
gatagtaatgatgaaaaagaaattgaaaagttaaatatgaagatcttagttttatcacaa
ttaaaacaagaattgcaaaagggaaaattaactaaagtcgcattaaaacaggttcaagtt
caattgttacaagttttcgcacaagatcaacaggttttgcaagaacgtattagacaggag
caacttcagcaggaacaacttcaacaaaggcaaaggaccgagcagctgcagctgcagcaa
ctttctcatcatcaaaatgctgctattaatcaacagtttcaaattaaaaatgaccacaat
cctttatttggtaattcgttgaatttaaatcctcaaggtttttcaactctgttcaataat
tcaaattttattccaatgaatcaaaatatggatgacaataacactatgggaggtatgaat
cttaataacataatagaacctgcaaatatttcaaacatagaaaaacagaacaaacttaat
aaaatgcatagcctattcgaatctttaaaagctgaaaagttggtattccaacctaaagaa
caatccatcatcactttgaatgcaaaattaaatatcgatgacggaaagttgataaataac
agcggaagggccaaatctgaaactgacttaactcgacttccttctattgaatttttaagt
aatattatttcggattgtaaagcatacttttctactgttaatattgacattgtcaatact
ccttctttgaacatttcacaagatttcatattaggagaaaataagattgtcgaaaataac
ttaattaatactctttatagagctaaaccaaaaaaatgtactctatgtggtaaaaggttt
ggtaacacattagatgaaagaagattacaaagtgatcacttagattggcatttccgaata
aataaaagaataaaaggttctgaaaatactttgtcgaatataacagcaacaaattcctca
tcaaatacaacgcagaaaaatatccaatcaagaaattggtatctacatgattcacaatgg
attatatttaaagataaagaaattgtttcaacatcaagaagtgatcattctgaaaataat
atgactgtcgtaaacttagatttcaatacgaatatgaactcacagaagaacaataacata
aataatgctgatagaaacttgtctggtaatgagtctaataaattcgtaaaaattgatgaa
ggtttattgtccaaaaagtatgtcattgtacctgaaagcgttgaagatatgtctttcaaa
tgtcccgtttgtaaagaaattgttgcagcaacatatgatgaagaacttggtgaatggatt
tggaaaggttgtatggaatataagggtaagtatttccatgcaacatgttattacgaatct
gctaaaaacaaaaatacctcaattggacttgagttagatatggaaaaattgaagaattta
attactgattag
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