Tetrapisispora phaffii: TPHA_0C03950
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Entry
TPHA_0C03950 CDS
T02235
Symbol
TPHA0C03950
Name
(RefSeq) hypothetical protein
KO
K14326
regulator of nonsense transcripts 1 [EC:
5.6.2.5
5.6.2.3
]
Organism
tpf
Tetrapisispora phaffii
Pathway
tpf03013
Nucleocytoplasmic transport
tpf03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
tpf00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
TPHA_0C03950 (TPHA0C03950)
03015 mRNA surveillance pathway
TPHA_0C03950 (TPHA0C03950)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tpf03019
]
TPHA_0C03950 (TPHA0C03950)
Enzymes [BR:
tpf01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
TPHA_0C03950 (TPHA0C03950)
5.6.2.5 RNA 5'-3' helicase
TPHA_0C03950 (TPHA0C03950)
Messenger RNA biogenesis [BR:
tpf03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
TPHA_0C03950 (TPHA0C03950)
mRNA cycle factors
Common to processing body (P body) and stress granule
TPHA_0C03950 (TPHA0C03950)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UPF1_Zn_bind
AAA_12
AAA_11
UPF1_1B_dom
AAA_30
AAA_19
ResIII
SLFN-g3_helicase
UvrD-helicase
Viral_helicase1
NPHP3_N
DEAD
Helicase_RecD
PhoH
AAA_22
AAA_16
nSTAND3
SRP54
Flavi_DEAD
Motif
Other DBs
NCBI-GeneID:
11533954
NCBI-ProteinID:
XP_003684979
UniProt:
G8BQN3
LinkDB
All DBs
Position
3:845209..848181
Genome browser
AA seq
990 aa
AA seq
DB search
MEDTTNVLYQPENVQDLDGFASEGNSFNDSEDEAQLHLNLNSKVELRENADDFGSNGHSG
HAHNEIQVSSAEHACGYCGIDSPTSVVKCNTCKKWFCNSKNGSLSGSHIVNHLVLSHHNV
VSLHPDSDLGDTVLECYNCGCKNAFLLGFVSAKSEAVVVLLCRIPCAQTKNVNWDTDQWQ
PIIENRQFLSWVAEEPTEEEKLTSRLITPSQISKLEAKWRSNKDATINDIDIPESQEEIV
SVLLRYQDAYEYQRSYGPLIKLEADYDKQLKESQALEHISIEWSIALNNRHMASFALSTF
ESNELKVAVGDEMILRYSGMQHPEWEGRGYIVHLPNSFKDEFSLELKPSKTPPPIHLGTG
FTAEFIWKGTSYDRMQDALKTFAVDKKSISGYLYYKILGHEVLDIAFDVPIPKELSIPHF
AQLNASQASAVANVLQKPLSLIQGPPGTGKTVTSATIVYHLSKSHKDRILVCAPSNVAVD
HLATKLRDLGLKVVRLTAKSREDVESSVSNLALHNLVARAAKGELRKLLKLKEEVGELSA
SDTKKFVKLLRKTESEIMKKADVVCCTCVGAGDKRLDTKFRTVLIDESTQASEPECLIPI
IKGAKQVILVGDHQQLGPVILERKAGDAGLKQSLFERLISLGHIPIRLEVQYRMNPYLSE
FPSNMFYEGSLQNGVTIEQRTVSASSFPWPIHEIPMMFWANFGREEISANGTSYLNRIEA
MNCERIITKLFKDGVKPEQIGVITPYEGQRAYILQYMQMNGSLDKELYINVEVASVDAFQ
GREKDYIILSCVRANEQQAIGFLSDPRRLNVGLTRAKYGLVILGNPRSLSRNSLWNHLLI
HFREKGCLVEGSLDNLQLCTVELTRSYQKKRNPNKFDFNMAANMGEFNSFNDFDTQSLLS
FAGGNASAAAMFNNSFGQTNDWPNNFNNNEYGSGYYSPVNDNKQQMPQGESFSKFDSSLS
RNLQENKGARSRYEPTEISNLNNEMSSLGF
NT seq
2973 nt
NT seq
+upstream
nt +downstream
nt
atggaagatacaactaatgttttataccaacctgagaatgtacaagacttagatgggttt
gcctcggaaggaaacagctttaatgattctgaagatgaagcacaactacatttgaatttg
aatagtaaagtcgaattgagagaaaatgccgacgactttggctccaatggccatagtgga
catgcacacaatgagatacaggttagttctgctgaacatgcttgtggttactgtgggatt
gattctccaacctctgtggttaaatgtaacacctgtaagaaatggttttgtaattcaaag
aatggatcgttatctgggtctcatattgttaaccatctagttctatcgcatcataatgta
gtatcattacatccggattcggatttgggtgatactgttttagaatgttacaactgcggt
tgtaagaatgcatttttattaggtttcgtttcagccaaaagtgaagctgtagtggttctt
ttatgccgtattccatgcgcacagactaaaaatgtcaattgggatactgaccaatggcag
ccaattattgagaatagacaatttttatcttgggtagcagaagaaccaactgaagaagaa
aagttaacgtcaagattgatcacgccttctcaaatatcgaagttggaggctaaatggaga
tctaataaagacgccactatcaacgatattgatatcccagaaagtcaagaagaaattgta
tctgttctattgagataccaagatgcatacgagtatcaacgttcatacggtccactaatt
aagcttgaagcagattacgataaacaactgaaagaatctcaagctctagaacatatatcg
atcgaatggtcaatagcacttaacaataggcatatggcctcatttgctctatcgacattt
gaatcgaacgaattaaaagttgcagttggtgatgaaatgattctaagatattctgggatg
cagcatccagagtgggaaggtagaggttatattgttcatttaccaaatagtttcaaggac
gaattttcactggaattaaaaccaagtaaaaccccacctccaattcatctagggactggg
tttactgcggaatttatttggaagggtacatcttatgatagaatgcaagatgcattgaaa
acgtttgctgtggacaagaaatctatttctggatatttatattataaaattttagggcat
gaagttctggacatcgcttttgatgttccgattccaaaagaattatccattccacatttt
gctcaattaaacgcatcgcaagcgagtgcagttgcaaatgtgctacagaaaccattgtca
ttgatccaaggtccacctggtactggtaaaacagtcacatctgctaccatagtttatcac
ttatcgaagtcacacaaagaccgtattttagtatgtgcaccatcaaatgttgcagttgat
cacttggcaacaaaattacgtgatttaggtttgaaagtagtaagattaactgcaaagagt
agagaagatgtagaaagctctgtttcaaatttagccttgcacaacttagttgctagagca
gcaaagggtgaattaagaaaattattgaaattaaaggaagaggtaggagaactatctgct
agtgataccaaaaaattcgtaaaactacttagaaaaacagaatcagaaataatgaagaag
gctgacgttgtatgttgtacgtgtgttggtgcaggtgacaagagattagataccaaattt
agaactgtcctgattgatgaaagtacacaagcttctgaaccagaatgtttaattccaatc
ataaagggtgcaaagcaggtcattctagtcggtgaccaccaacaattaggccctgttatt
ttagaaagaaaagctggtgatgcaggtttgaagcaatcattatttgaaaggttgatttcc
ttaggccatattccaattcgtttggaagttcaatatcgtatgaacccttacttgagtgaa
ttcccaagtaatatgttttatgaaggtagtttacaaaatggtgtaacaattgaacaaaga
acagtatctgcaagttcatttccatggccaattcatgaaattcctatgatgttttgggca
aattttggaagggaagaaatttctgcaaatggtacatcgtatttaaatagaattgaagct
atgaattgtgaacgtattattacgaaattattcaaagatggtgtaaaacctgaacaaatc
ggtgttattactccgtacgaaggccaaagagcttatatattacaatacatgcaaatgaat
ggttctttagacaaggaattgtatattaatgttgaggtagcttccgtggatgctttccaa
ggtcgtgaaaaggattatatcatcctatcttgtgttcgtgcaaatgaacaacaagcgatt
ggttttttgagtgacccacgtcgtttaaatgttggtttgactcgtgcaaaatatggttta
gttattttaggtaatccaagatcgctatccagaaattcattatggaatcaccttttgatt
cactttagagaaaaaggttgtttagttgaaggttccttagacaatttgcaattatgtact
gttgaattaactagatcatatcagaaaaaaagaaacccaaataaatttgattttaatatg
gcagctaacatgggtgaattcaattcctttaacgattttgacactcaaagtttattatct
ttcgcaggcggcaacgcctctgctgctgctatgttcaacaattcatttggacaaacaaat
gattggccaaataacttcaataacaatgaatatggatctggttactactcccctgtgaat
gataacaagcaacagatgcctcaaggagaatctttttcgaaatttgactcaagtttgtcc
agaaatttgcaagagaataaaggtgctagatcaagatacgagcctactgaaatcagtaat
ctaaataatgaaatgtcgtcgttaggtttttag
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