Tetrapisispora phaffii: TPHA_0D01390
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Entry
TPHA_0D01390 CDS
T02235
Symbol
TPHA0D01390
Name
(RefSeq) hypothetical protein
KO
K14284
nuclear RNA export factor
Organism
tpf
Tetrapisispora phaffii
Pathway
tpf03008
Ribosome biogenesis in eukaryotes
tpf03013
Nucleocytoplasmic transport
tpf03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
tpf00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
TPHA_0D01390 (TPHA0D01390)
03015 mRNA surveillance pathway
TPHA_0D01390 (TPHA0D01390)
03008 Ribosome biogenesis in eukaryotes
TPHA_0D01390 (TPHA0D01390)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tpf03019
]
TPHA_0D01390 (TPHA0D01390)
03009 Ribosome biogenesis [BR:
tpf03009
]
TPHA_0D01390 (TPHA0D01390)
Messenger RNA biogenesis [BR:
tpf03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Nuclear pore complex
TPHA_0D01390 (TPHA0D01390)
mRNA cycle factors
Stress granule specific factors
TPHA_0D01390 (TPHA0D01390)
Ribosome biogenesis [BR:
tpf03009
]
Eukaryotic type
Pre-60S particles
Export and cytoplasmic maturation factors
TPHA_0D01390 (TPHA0D01390)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
NXF_NTF2
RRM_9
LRR_NXF1-5
TAP_C
LRR_9
LRR_4
NTF2
DHU1_N
Desmo_N
LRR_8
Motif
Other DBs
NCBI-GeneID:
11534402
NCBI-ProteinID:
XP_003685214
UniProt:
G8BSF9
LinkDB
All DBs
Position
4:289408..291129
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AA seq
573 aa
AA seq
DB search
MNGFHNVNNLGSLATQQMMTNRVEVVITNWENGSINDLTSFLSRQSRIAVRDVRVEGNAA
IGYVANKKEAEALNKFNGIRFAGKSLKIQVTGGVDNSSPTVKLLKAFLFRRYDPQTKMLN
LGSIHTDAELVQKGLFTTISTQSKMFAAMMKLASSESNLVVESVNLSDNNLKDINGITTL
AQTFPNLKNLCLANNQIARYKSMEPWKNKFKKLRELLMTNNPIVNERAYKNEMLKIFPKL
VMLDNIVVRDAQKLDAIYNFPFKSKPFFFENNELGSSSTEFVTNFLNLWDSDRSQLLQLY
TPQSQFSMCSDASVPPSSVKDADQNPSFGFYLSSSRNITKISTDTSIQQKLATGPEGIAE
IFNSLPMTKHYLLEKAESYSMQTISYGQVNGFMIILHGFFEETTKPMNVNNKGRPRRFNH
GSNASSDKRLSKKSFDRVWVLVPTNYGVIVASDMLTVRPYVSAAWIKVPDTPATINNTAV
PMQQMNQPNFVPNTTMNQQMSPPILAPTLQLPPEIQARLSPIQLELLNKLHVDTKLNSEY
TYMLAEQSGWNYDVAFKGFQSSMGQIPREAYIQ
NT seq
1722 nt
NT seq
+upstream
nt +downstream
nt
atgaatgggttccataacgttaataatttaggttcattggcaactcagcaaatgatgacg
aacagggttgaagttgtcatcaccaactgggaaaatggctctattaacgacttgacaagt
tttttgagtcgccagtctcgtattgcagtaagagatgtacgagttgaaggtaatgcagct
attggttatgttgcaaacaagaaagaagccgaagcattaaacaagttcaatggcatcagg
tttgccggtaagagtttgaagatacaagtaaccggaggtgtcgacaattcctctccaaca
gtgaaactattaaaagcgtttttatttagaagatatgatccccagactaagatgttgaat
ctaggtagtatacacactgatgctgaattagtacaaaaaggtcttttcaccaccatttct
acgcaatcaaaaatgttcgcggccatgatgaaattagcatcatcggagtcaaatttagta
gtagaaagtgttaatttatcagataacaacttgaaagatatcaatggtattacaacattg
gcacagacgttcccaaatttaaaaaatttatgtctagccaataaccaaatcgcaagatat
aaaagcatggaaccttggaagaataaatttaaaaaattaagagaattactaatgacgaat
aatccaattgtaaatgaaagggcatataaaaatgagatgcttaagatattccctaagttg
gttatgctagataatatagttgtgagagatgctcaaaaattagatgctatttacaacttt
ccattcaagagtaagccatttttctttgaaaataatgaactgggctcatcttcaactgaa
tttgtaacaaattttctaaatttatgggattctgacagatcacaattgttgcaattatac
acgccacaatctcaattctccatgtgttcagacgcctcggttccaccttctagtgttaag
gatgctgatcaaaatccatcatttggtttttacttatcatcatcacgtaatataactaaa
atatctactgatacctcaattcagcaaaaattggccactggtccagaaggtattgctgag
atttttaactccttaccaatgaccaaacattatttactagaaaaagcagagtcgtactct
atgcaaacaatatcttacggtcaagtgaatgggtttatgattatcttacacggtttcttc
gaagaaactacaaaaccaatgaatgtaaacaataaaggccgtcctagaagattcaaccac
ggtagcaatgcttcaagtgacaaaaggctctctaaaaagtccttcgatagagtgtgggtg
ttggtacctacaaattatggtgttatagtagcttctgatatgttaactgtaagaccttat
gtttctgctgcttggataaaggtaccggatactccagctacaattaataatacagcagtt
ccgatgcagcaaatgaatcaaccaaattttgtacctaatacaacaatgaatcaacagatg
agtcctcctatattagcaccaactctgcaattaccgccggaaatccaggctagattatca
cctattcaattggagttattgaataagcttcatgtagacacaaaattaaattcggaatac
acatatatgttagctgaacaaagtgggtggaattatgatgttgcattcaagggattccaa
tccagtatggggcaaattccaagagaagcctacatacaataa
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