Tetrapisispora phaffii: TPHA_0D04520
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Entry
TPHA_0D04520 CDS
T02235
Symbol
TPHA0D04520
Name
(RefSeq) hypothetical protein
KO
K12614
ATP-dependent RNA helicase DDX6/DHH1 [EC:
5.6.2.7
]
Organism
tpf
Tetrapisispora phaffii
Pathway
tpf03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
tpf00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
TPHA_0D04520 (TPHA0D04520)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tpf03019
]
TPHA_0D04520 (TPHA0D04520)
03036 Chromosome and associated proteins [BR:
tpf03036
]
TPHA_0D04520 (TPHA0D04520)
Enzymes [BR:
tpf01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
TPHA_0D04520 (TPHA0D04520)
Messenger RNA biogenesis [BR:
tpf03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
Common to processing body (P body) and stress granule
TPHA_0D04520 (TPHA0D04520)
mRNA degradation factors
5'-3' decay
Decapping complex
TPHA_0D04520 (TPHA0D04520)
Chromosome and associated proteins [BR:
tpf03036
]
Eukaryotic type
Gene silencing
piRNA pathway
TPHA_0D04520 (TPHA0D04520)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Phage_integrase
Motif
Other DBs
NCBI-GeneID:
11534270
NCBI-ProteinID:
XP_003685520
UniProt:
G8BS11
LinkDB
All DBs
Position
4:985683..987191
Genome browser
AA seq
502 aa
AA seq
DB search
MSNSEQDWKSQLNIPKKDTRPQTEDVLNTKGNTFEDFYLKRELLMGIFEAGFEKPSPIQE
ESIPVAIAGRDILARAKNGTGKTAAFVIPTLEKVKSKINKIQALIMVPTRELALQTSQVV
RTLGKRCEISCMVTTGGTNLRDDIIRLNETVHILVGTPGRVLDLASRGIADLSGCGLFIM
DEADKMLSRDFKSIIEQILTFLPEQHQSLLFSATFPLTVKEFMVKHLHKPYEINLMDELT
LKGITQYYAFVEEKQKLHCLNTLFSKLQINQAIIFCNSTNRVELLAKKITDLGFSCYYSH
ARMKQQERNRVFHEFRHGKVRTLVCSDLLTRGIDIQAVNVVINFDFPKTAETYLHRIGRS
GRFGHLGLAINLINWNDRFNLYKIEQELGTEIAAIPTTIDKSLYVANDNSAVPVPFPIEQ
QLIPQNLPPQQQLPLPPQMNAHFNTMNQQQFQMQQQPSPLQQQQQQPQQPQQPQQQFQQP
PQQFQQYPQQGMPIQAPQHPQF
NT seq
1509 nt
NT seq
+upstream
nt +downstream
nt
atgagtaactctgaacaagactggaaatcacaattgaatatccctaaaaaagatacaaga
ccacaaacagaagatgttttgaatacaaaaggtaacacttttgaagatttttatttaaag
agggaactattaatgggtatttttgaagctggttttgaaaaaccatcacctatccaagaa
gaatctattcctgttgccattgcaggtagagacattttagcaagagctaaaaatggtaca
ggtaaaactgctgcattcgtgattccaactttagaaaaagtgaaatctaagattaacaaa
atacaagccctaataatggtcccaacaagggaattagcattacagacatctcaagtagtg
cgtaccctgggtaaaagatgtgaaatatcttgtatggtaactaccggtggtaccaattta
agagatgatattattagattaaatgaaactgtacatatattagtcggtactccaggtaga
gtattagatttagcctctagaggtattgctgatttatccggatgtggtcttttcatcatg
gatgaagctgataaaatgttgtcccgtgattttaaatctattattgaacaaattttaact
ttcttaccagaacaacaccaatcactattatttagtgctactttccctttgacagtgaaa
gagttcatggttaaacatttacataaaccttatgagattaatctgatggatgaactaaca
ttaaaaggtataacacaatattatgcatttgttgaagaaaagcaaaaattacactgttta
aacactttattttcaaagttacaaattaatcaagctattatcttctgtaattctacaaac
cgtgtcgaattgttagccaaaaagattactgatttgggtttttcatgttactattctcat
gccagaatgaagcaacaagaaagaaacagagtgtttcacgaattccgtcatggcaaagtc
cgtactttggtttgttctgatttattgactcgtggtattgatattcaagctgtgaacgtt
gtcatcaattttgatttcccaaagactgctgaaacttatttacatcgtatcggtagatct
ggtagatttggtcatttaggtttagcaatcaatttgatcaactggaatgaccgttttaat
ttatataagatcgaacaagaattaggtacagaaattgcagccataccaactactattgac
aaatcattatatgtcgctaatgataattccgctgttccagtaccattcccaatcgaacag
caactaatccctcagaatttaccaccacaacaacaattacctttaccacctcaaatgaat
gcccacttcaataccatgaaccaacagcaattccaaatgcaacaacaaccatcaccacta
caacaacaacaacaacaacctcagcaaccacaacaacctcagcaacaattccaacaacct
ccacaacaatttcaacaatacccacagcaaggtatgccgatacaggcaccacaacacccg
caattttaa
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