Tetrapisispora phaffii: TPHA_0E01380
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Entry
TPHA_0E01380 CDS
T02235
Symbol
TPHA0E01380
Name
(RefSeq) hypothetical protein
KO
K18748
protein SSD1
Organism
tpf
Tetrapisispora phaffii
Brite
KEGG Orthology (KO) [BR:
tpf00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tpf03019
]
TPHA_0E01380 (TPHA0E01380)
Messenger RNA biogenesis [BR:
tpf03019
]
Eukaryotic type
mRNA surveillance and transport factors
Factors involved in mRNA localization
Other mRNA localization factors
TPHA_0E01380 (TPHA0E01380)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
Dis3l2_C_term
OB_Dis3
CSD2
OB_RNB
Rrp44_CSD1
DUF5774
Motif
Other DBs
NCBI-GeneID:
11531496
NCBI-ProteinID:
XP_003685667
UniProt:
G8BTK5
LinkDB
All DBs
Position
5:278339..281998
Genome browser
AA seq
1219 aa
AA seq
DB search
MSNAGSNNKSYYISATGNKNGPKQIHVAHRRSQSELTDLMIEQLSLEDVQKHNQSQNNTN
NHTNYRGSPIHHNKNNNHYNNNFHSRNYSEHSNNNNPFSPPKINIQDSDDRNSLGYMHKK
TGSQSSAYGHNRRQSLVIDEAKKYAAEEQAKRHGNEDTLNIQTSSNLSLDPPPSFKFPQS
PEKHLGQQSFKFPPSIKINTKKESPKKDEDNFIKTPTHSHRRSRSRNNFNGYSNKQNNQS
LSNQHSPFRSVSGQSKDNNYNSFTALEPPALFQPGHNNNRPSNGSIQSNNSHGSANVNGN
GNGNGNGNGSQRKALYTPYLPQSNIPDLVKQGRLVTGVLRVNKKNRSDAWVTTDGVLDAD
IYICGSKDRNRALEGDLVAVELLAVDDVWESKREKEEKKRRKDASIQHDIIPLDSTDDYH
NDASINISNKLHASNEDYPILSPNTPNLKRYDSEKPGAGSDSETISPSRSSVKRRGSLKQ
RPTQKKNDDVEVEGQSLLLVEEEEINDDFRPLYAGHVVAVIDRIPGQLFSGTLALLRPSQ
QTQHDNKPPHVPKIVWFKPTDKKVPLIAIPTELAPKKFVENAENYNDTLFVAALKRWPIT
SLHPFGVIITELGVLSDPNIEIESILKDKNFLSNEYLDANDKTKERSNFKPLEIKNETYE
TRKNFFNENIVAISTLESITDFSFHINESIKGKLQFGCHIVDATESIEPNSSLDRRARKR
STGVFLPQKSVNLLPKVFNEFLTFKEDKVSLAISVVFTLDAETFETESIWIGETTIKPSM
VISEESLNDIVEQGSSKTVAKLQQIANQFLRERIDYVDADVSVSLPLINSLDDEKVLVDL
NIFENRISSNIIEEIKRRVNSIVAKEIYDKLGDKAFLRRQAIPNDTKMEFFKKKVNQLGF
EIDTSSASGLLKYILSIKDPNARRGVEILLFKLMSRGKYYVAGKVDKEQHKNFITNIPLY
THFTSPLRRYADHIVHRQLKSLLRGNEFEEDIHSLRITSEYCNFKKDCTYDAQVQAIHLL
LSSAINDMSKPTGQLLTMATVLQVYESSFDIFIPELGIEKRVHGDQLPLIKARFDPMNKV
LELYWQPRIDSATFIPADERQANSYRNSIKNKFKSESEEIATNEFDKYNNNEYLVSPSFQ
KELESMNLKIPHISFPEYDPKIGALQSFLSTTVSRRENEHYIQEITELQRIPVLLRAEIG
MALPCLTVSALNPFIKTED
NT seq
3660 nt
NT seq
+upstream
nt +downstream
nt
atgtccaatgctggttctaataataagagctattacatttcagctacaggaaataaaaat
ggtccaaaacagatccacgtagctcacagaaggagtcaaagtgagttgactgatttaatg
atcgagcaattatctttagaagatgtccaaaaacataatcaaagtcaaaataataccaat
aaccatactaattacagaggttccccaatccaccacaataaaaacaacaatcattataat
aataacttccattcaagaaattattctgaacattctaataacaataatcccttttctcct
ccaaagattaatattcaagattctgatgatagaaatagtttgggttacatgcacaagaaa
acaggttctcaatcaagtgcgtatggccataatagaaggcaatctttggtcattgatgaa
gcaaaaaaatatgcggcagaggaacaagctaagagacatggtaatgaagacactttaaat
attcaaacttcatctaatttatccttagatcctccacctagtttcaaatttcctcaatct
ccagaaaaacatttgggtcaacaaagtttcaaatttccaccttcaattaaaataaataca
aaaaaagaatctccaaaaaaggatgaagataattttattaaaaccccaacccattctcat
cgtcgttcaagatcgagaaacaatttcaacggctattccaataagcagaataaccaatca
ctatctaatcaacattcacctttccgtagtgtaagtggacaatcaaaggataataactat
aattcatttactgcactagaacctccagcactattccaaccaggtcacaataataatcgt
ccatccaacggttctatccagagcaataattcccacggaagcgctaatgttaatggtaat
ggtaatggtaatggtaacggtaatggtagtcaaagaaaagcactttatactccttatctt
ccacaatcaaatattccagacttagtaaagcaaggcagattggttactggtgtactaaga
gtcaataaaaaaaatagatcagatgcttgggttactacagatggtgttttagatgctgat
atttatatatgtggttccaaagaccgtaacagagcacttgaaggtgatttggttgcagtt
gaattattggctgtggatgatgtttgggaatcaaagagagaaaaggaagagaagaagaga
aggaaagatgctagtatccaacatgacatcattccattagacagtactgatgattaccat
aacgatgcttccattaacatttcaaacaagttacatgcatcgaatgaagattacccaata
ttatcaccaaataccccaaatttaaaacgctatgattcagaaaaaccaggtgctggatct
gactctgaaacaatatcacctagcagatcttctgttaaaagaagaggttctttgaaacaa
cgcccaacacaaaaaaagaatgatgatgtcgaagttgaaggtcaatcattattattagtg
gaagaagaagaaatcaatgatgactttagaccattatatgctggtcatgttgttgcagtt
atcgaccgtatccctggtcaattattcagtggtactttagctctattaagaccttctcaa
caaactcaacatgataataaaccacctcatgttcctaaaattgtttggtttaaacctact
gataaaaaggtgcctttaattgccattccaactgaattagcacctaaaaagtttgtcgaa
aatgctgaaaactataatgatacattatttgtcgcagctttaaaacgttggccaattact
tctttacacccatttggtgtcattattaccgaacttggtgttttaagtgatccaaatatt
gagattgaatcgattttgaaggataaaaatttcttatcgaatgaatatttagatgctaat
gataaaacaaaggagagatcgaactttaagccattagaaataaaaaatgaaacatatgaa
acaaggaaaaatttcttcaatgaaaatattgttgctatttcaactttagaaagcattact
gatttttctttccacataaacgaatcgattaaaggcaaacttcaatttggttgccatatt
gttgatgctacggagagtatcgaaccaaactcttcacttgatcgtagggctagaaagaga
tctacaggtgtcttcttacctcagaaatcagttaatttattaccaaaagtgtttaatgaa
ttcttaacttttaaagaggataaagtttctttagccatttcggtagtatttacattagat
gcagaaacatttgaaactgaatctatatggattggtgaaacaacaattaagccatctatg
gttatttctgaagaatccttgaacgatatagttgaacaaggctcctcaaagactgttgct
aaacttcaacaaattgcaaaccagtttttgcgtgagagaatcgattacgttgacgctgat
gttagtgtttcgcttccactaataaatagtttagatgatgaaaaggttcttgttgattta
aacatttttgaaaaccgtatatcttcaaatattatagaagaaatcaaacgtcgtgttaat
tcaattgttgcaaaagagatttacgacaagttaggtgataaagcctttttgcgtagacag
gcaattcctaatgatacgaaaatggaattctttaaaaaaaaagtcaatcaattaggtttc
gaaattgatacgtcatctgcaagtggattactaaagtatatattgagcattaaagatcca
aatgccagaagaggtgttgaaattttgttattcaaattaatgtcaagaggaaagtattat
gttgctggaaaagttgataaagaacagcataaaaactttattactaatatcccactatat
acgcattttacatctcctctgagaagatatgctgatcacattgttcacagacaattgaag
tcactattacgtggtaatgaatttgaggaagacattcattcattaagaattacatcagaa
tattgtaatttcaaaaaggattgtacatatgatgcgcaagtacaagctattcatttatta
ttgtctagtgctattaatgatatgagtaaacctaccggtcaattgctaacaatggcaacc
gttttacaggtttacgaatcttcctttgatatttttatcccagaactaggtattgaaaag
agagtgcacggtgatcagttgcctttaatcaaagctcgttttgatccgatgaataaggtc
ttggaattatactggcaacctagaattgatagtgctacatttattccagcagatgagaga
caagccaattcctatagaaattctatcaagaataaatttaaatccgaatccgaagaaatt
gccactaatgaatttgataagtataacaataatgagtatttagttagtccatcttttcaa
aaagagttagaaagcatgaacttaaagatacctcatataagctttccagaatatgatcct
aaaattggtgcgttacaaagctttttatctaccactgtttctaggagagaaaatgaacat
tatatccaagaaataactgaattgcaaagaatacctgttctattaagagctgagattggt
atggcattaccatgtctaactgtcagtgctttaaatccttttatcaaaactgaagactaa
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