Tetrapisispora phaffii: TPHA_0G02050
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Entry
TPHA_0G02050 CDS
T02235
Symbol
TPHA0G02050
Name
(RefSeq) hypothetical protein
KO
K12812
ATP-dependent RNA helicase UAP56/SUB2 [EC:
5.6.2.7
]
Organism
tpf
Tetrapisispora phaffii
Pathway
tpf03013
Nucleocytoplasmic transport
tpf03015
mRNA surveillance pathway
tpf03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
tpf00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
TPHA_0G02050 (TPHA0G02050)
09122 Translation
03013 Nucleocytoplasmic transport
TPHA_0G02050 (TPHA0G02050)
03015 mRNA surveillance pathway
TPHA_0G02050 (TPHA0G02050)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tpf03019
]
TPHA_0G02050 (TPHA0G02050)
03041 Spliceosome [BR:
tpf03041
]
TPHA_0G02050 (TPHA0G02050)
Enzymes [BR:
tpf01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
TPHA_0G02050 (TPHA0G02050)
Messenger RNA biogenesis [BR:
tpf03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
TPHA_0G02050 (TPHA0G02050)
Spliceosome [BR:
tpf03041
]
Complex C
Other components
EJC/TREX
TPHA_0G02050 (TPHA0G02050)
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
TPHA_0G02050 (TPHA0G02050)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Cas3-like_C_2
P-loop_SecA
Motif
Other DBs
NCBI-GeneID:
11535712
NCBI-ProteinID:
XP_003686475
UniProt:
G8BVW3
LinkDB
All DBs
Position
7:420332..421648
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AA seq
438 aa
AA seq
DB search
MSHEGEEDLLEYSDNEQDIQVVADKAAENTETATADEGVEGEDKKGSYVGIHSTGFKDFL
LKPELSRAIIDCGFEHPSEVQQHTIPQSIHGTDVLCQAKSGLGKTAVFVLSTLQQLDPVP
GEVSVVVICNARELAYQIRNEYLRFSKYMPEVKTAVFYGGTPIKNDADLLKNKETAPQII
VATPGRLKALVRDKLIDLSHVKNFVIDECDKVLEELDMRRDVQDIFRATPRDKQVMMFSA
TLSEDIRPICRRFLQNPLEIFVDDEAKLTLHGLQQYYIKIEEREKNRKLAQLLDDLEFNQ
VIIFVKSTKRANELTKLLNDSNFPAITVHGHMKQAERIARYKAFKDFEKRICVSTDVFGR
GIDIERINLAINYDLTTEADQYLHRVGRAGRFGTKGLAVSFVSSPEDEEVLGKIQERFDV
KIAEYPEEGIDPSTYLNN
NT seq
1317 nt
NT seq
+upstream
nt +downstream
nt
atgtcacacgaaggtgaagaagatttattggaatattccgataacgaacaagatattcag
gtcgttgctgataaggctgctgaaaacactgaaactgccactgctgatgaaggtgtcgaa
ggtgaagataagaaaggttcttatgttggtatccattccactggtttcaaggatttctta
ttgaaaccagaattgtcaagagctatcattgactgtggttttgaacatccttctgaagtt
caacagcataccatcccacaatctattcacggcactgacgttctatgtcaagctaaatct
ggtttgggtaagactgctgtttttgttttgtctactttacaacagttggaccctgttcca
ggcgaggtttccgttgtcgttatctgtaacgcaagagaattagcttatcaaattcgtaac
gaatatttaagattctccaaatatatgccagaagttaaaactgctgtcttctacggtggt
actccaatcaagaacgatgccgatttattgaagaataaagaaaccgctcctcagatcatt
gttgctaccccaggtagattaaaggctttggttagagacaagttaattgatttatcccac
gttaagaacttcgtcatcgacgaatgtgacaaagttttggaagaattagacatgagaaga
gatgttcaagacattttcagagcaactccaagagacaagcaagttatgatgttctctgct
actctatccgaagacattagaccaatctgtagacgtttcttacaaaatccattagagatc
ttcgttgatgatgaagctaagttaactttacacggtttacaacaatactacatcaagatt
gaagaacgtgaaaagaaccgtaaattagcccaattattagatgatctagagttcaaccaa
gttatcattttcgtcaaatctacaaagagagctaatgaattaacaaaattgttaaacgac
tctaactttccagctattactgttcacggtcacatgaaacaagctgaacgtattgctcgc
tataaagcttttaaggacttcgaaaagcgtatctgtgtttccactgatgttttcggtaga
ggtatcgatatcgaacgtattaacctagctatcaactacgatctaacaaccgaagctgat
caatacttacacagagtcggtagagccggtagattcggtactaaaggtttagctgtttct
ttcgtttcctccccagaagatgaagaagttttgggaaagattcaagaacgtttcgatgtt
aaaattgccgaatatccagaagaaggtattgacccatctacatacttaaacaactaa
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