Tetrapisispora phaffii: TPHA_0H00510
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Entry
TPHA_0H00510 CDS
T02235
Symbol
TPHA0H00510
Name
(RefSeq) hypothetical protein
KO
K12618
5'-3' exoribonuclease 1 [EC:3.1.13.-]
Organism
tpf
Tetrapisispora phaffii
Pathway
tpf03008
Ribosome biogenesis in eukaryotes
tpf03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
tpf00001
]
09120 Genetic Information Processing
09122 Translation
03008 Ribosome biogenesis in eukaryotes
TPHA_0H00510 (TPHA0H00510)
09123 Folding, sorting and degradation
03018 RNA degradation
TPHA_0H00510 (TPHA0H00510)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tpf03019
]
TPHA_0H00510 (TPHA0H00510)
03009 Ribosome biogenesis [BR:
tpf03009
]
TPHA_0H00510 (TPHA0H00510)
03016 Transfer RNA biogenesis [BR:
tpf03016
]
TPHA_0H00510 (TPHA0H00510)
03036 Chromosome and associated proteins [BR:
tpf03036
]
TPHA_0H00510 (TPHA0H00510)
Messenger RNA biogenesis [BR:
tpf03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
Common to processing body (P body) and stress granule
TPHA_0H00510 (TPHA0H00510)
mRNA degradation factors
5'-3' decay
5' exonucleases
TPHA_0H00510 (TPHA0H00510)
Ribosome biogenesis [BR:
tpf03009
]
Eukaryotic type
Pre-60S particles
RNases
TPHA_0H00510 (TPHA0H00510)
Transfer RNA biogenesis [BR:
tpf03016
]
Eukaryotic type
tRNA degradation factors
Rapid tRNA decay (RTD) pathway factors
TPHA_0H00510 (TPHA0H00510)
Chromosome and associated proteins [BR:
tpf03036
]
Eukaryotic type
Gene silencing
piRNA pathway
TPHA_0H00510 (TPHA0H00510)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
XRN_N
XRN1_D2_D3
XRN_M
XRN1_D1
SH3_12
Motif
Other DBs
NCBI-GeneID:
11533711
NCBI-ProteinID:
XP_003686695
UniProt:
G8BWV7
LinkDB
All DBs
Position
8:complement(98545..103023)
Genome browser
AA seq
1492 aa
AA seq
DB search
MGIPKFFRYISERWPLILQLIENDQIPEFDNLYLDMNSILHNCTHGNDMDNTRQRLSEEE
VYAKIFAYIDHLLNTIKPKKVFYMAIDGVAPRAKMNQQRSRRFRTAMDAETALKKAIANG
DELPKGEPFDSNSITPGTEFMAKLTRNLKYFIHDKISNDLNWQNIEVVFSGHEVPGEGEH
KIMDFIRNLRSQKDYEQNTRHCIYGLDADLIMLGLSTHDPHFSLLREEVKFGGRRNNSGS
LPLEKQNFYLLHLSLLREYMNLEFIEISTNLQFKYEFDRILDDFILIMFVIGNDFLPNLP
DLHLNKGAFPVILQTFKEALLHLDGYINENGKINLKRLGVWLNYLSQFELMNFEKDDIDV
DWFNKQLENISLEGEKKRLRQGKKLLLKQQKKIVGAIKPWLLNLAQKPIKELSNLSKDNE
SALSLELSDSNIVENLEFLKNFAFDLGLFVSHSKSKDSYSLNLDIDSINPVETEEEHQER
IKSIKSNLKKYQNAILVEDKEELDNEQEIYDARFEAWKREYYQDKFNLFGSEKVVTEEEI
KFDENDDTTNNTEIKRTVEYVNINSEEDVAEIARNYVEGLQWVLYYYYRGCPSWSWYYKG
HYAPRISDLAKGLDQTFVFEKRHPFTPFQQLMAVLPERSKNLIPAVLRPLMFDEKSPILD
FYPNEVQLDKNGKSADWEAVVLLSFVDEDRLVTAMQPYLEKLTPEEKERNSFGIDLTFRF
NPQVDEVYKSPLNGVFSDIKHNHCMEIKFEMEKLDLHEIRYGLLPEAKDGKYLSAGFPSF
DTIPFDAKLEYNETAVFQQPSKQQSMVIYINNVYEGDDVTIDEISNRFMKSIVYTKWPYL
RESKLIGVSNGIETIGADEMTGKITKRNLSDLEKKEYNNLKNSMYRNYGKQQAVKIGDIK
SIIKVVPVTGLARDSTGAYVKTFGSQIEYYPVQLMVDSIINVDKRFVEKPPQPIDQEFPE
GSKVVFLGDYAYGGTATIDGYSSGSRLKLSVEKRSIRSEPTIGKIRHDIDKKLIKYQPSY
IVSKTLKFHPLFLSKITSKYLVAGIDGRRVDVGIPIKFEGRRQKVLGYARRSVKGWEYSN
LTIDLLNHYKKTFPEFIDKLARLKTNDIPNIGELYPELTNVKAAELLDRVKTWLKNATEN
FVTVSLESDSLSKASINAIEEAIIPYSTFAEQSEIKQLAKVPREAILDPKESLTKLRSQR
FDLGDRVIYIQSSGKVPLFSKGTVVGYTTLPHSISVQVLFDNEIVAGNRFGGRLRTNRGL
GLDASYLLNISNRQFIYHSKASKKTGGEQKNTAASIEAKKERVAKIRTARAQDLLTHIND
NKSNTSAANDANIAPAAALPPIRHAANHIYSAVLNQYSNEGPATGNPQPISESNGDNQAG
LPYHLPPGFVPPNPMMFSPPPHGPTGLPLPMGNFMHPPQGMFPPPVPMPMNGAMQHPPVD
QKGSAELKSFIKNKKPQDDNKKNTSHKKHPQQNKNRNNGKKTAKNPSNKDTN
NT seq
4479 nt
NT seq
+upstream
nt +downstream
nt
atgggtattcctaagttttttaggtacatctctgagagatggcctttgattttgcaattg
attgagaatgaccagattccagaattcgacaatttgtatttggacatgaactcaattctt
cataattgcacacatggtaatgatatggataacactagacagagattgtccgaggaggag
gtttacgctaaaatatttgcctacatcgatcatcttttgaacactattaaacctaagaaa
gtgttttatatggcaatcgatggtgttgctccaagagctaagatgaaccagcagagatct
cgtagattcagaaccgctatggatgctgaaaccgctctgaagaaagcaatcgccaatggt
gacgagttaccaaagggcgaacctttcgactcgaactctattaccccaggtactgaattc
atggcgaaattaactagaaatttgaaatatttcatacatgataagatttcaaacgatttg
aattggcaaaacattgaagttgttttctctggacatgaggtcccaggtgaaggtgagcat
aaaatcatggatttcataagaaatctgaggtcgcaaaaggattacgaacaaaatacaaga
cattgtatttacggtttagatgccgatctgatcatgttaggtttatccacccatgatcca
catttttccctactgagagaagaagttaagttcggtggtagacgtaataatagtggtagt
cttcctttagaaaaacaaaatttctacctattacatctatcactgttaagagagtacatg
aatttagaatttattgaaatatcaactaacttacaatttaagtatgaatttgatagaatt
ttagatgatttcattcttattatgttcgttattggtaatgatttcttacctaatttacca
gatttacatttaaataaaggtgctttccctgtcatcttacaaacatttaaagaagcttta
ttgcacttggatggttacatcaatgaaaatggtaaaattaatttaaagagattaggtgta
tggttgaattacctttcacagttcgagttaatgaactttgaaaaagatgatatagatgtc
gattggtttaataaacagttagaaaatatttctttagaaggtgaaaaaaaaagattaaga
caaggcaaaaaattattattgaaacaacaaaagaaaattgttggtgcaattaaaccttgg
ttactaaatttagcacaaaaaccaataaaggaattatctaatttatcaaaggataacgaa
agtgcattatctttagaacttagcgattcaaatattgttgaaaatttagaattcttgaag
aatttcgcattcgatttggggctatttgtttcacattcgaaatcaaaggattcttattca
ttgaacttagatatagattcaattaacccagttgaaactgaagaagaacatcaagagaga
attaaatcgattaaatctaatttaaagaaataccagaacgcaattttagtagaagataaa
gaagaattagataatgaacaagaaatttatgatgcaagattcgaagcttggaagcgagaa
tattatcaagataaattcaacttgtttggttcagaaaaagtcgtcactgaagaagaaata
aaatttgacgaaaacgatgataccaccaataataccgagataaagagaaccgttgagtat
gtaaatattaatagcgaggaagatgtcgccgaaatcgccagaaattatgtggaaggttta
caatgggtattgtattattactatcgtggttgtccatcctggagttggtactacaaggga
cattatgctccaagaatttccgatttagctaagggtttagaccaaacatttgttttcgaa
aaacgtcatcctttcaccccattccaacagttgatggctgtgttgccagaaagatccaaa
aacttaataccagcagttctaagaccattgatgtttgatgaaaagtcaccaattttggat
ttctatcctaatgaggtacagttagacaaaaatggtaagagtgccgactgggaagctgtt
gtattattgtccttcgttgacgaagatagattagtaactgccatgcaaccttacttggaa
aagctaactcctgaggaaaaagaaagaaactcttttggtatcgatttgacttttagattc
aatccacaagtggatgaagtctataaaagtccattaaatggtgtttttagcgatattaag
cacaatcattgtatggaaatcaaatttgaaatggaaaaattagatttacatgaaattcgt
tatggattattaccagaagcaaaagatggtaagtatttatctgcagggtttccaagtttt
gatactattccatttgatgcaaaattagagtacaatgaaacagctgtgttccaacaacca
tcaaagcaacaatcaatggtcatctacattaataatgtatatgaaggtgatgatgtcact
attgatgaaatatctaatagatttatgaaatcaattgtatatactaaatggccatatttg
agagagtcaaaattaattggagtttccaatggtattgaaacaattggtgctgatgaaatg
actggcaaaatcactaaaagaaatttatcagatctcgaaaaaaaggaatataataaccta
aagaattctatgtatagaaattatggtaaacaacaagccgtaaaaattggtgacattaaa
tctatcataaaagtcgttcctgtcactgggttagcaagagattctactggtgcatatgtt
aaaacatttggatcacaaattgaatattacccagtgcagttaatggtagactcaattatt
aatgttgataaaaggtttgtcgaaaagcctccacagccaattgaccaagaatttcctgaa
ggttctaaggttgttttcttaggtgattacgcatatggtggtacagctactatagacggc
tacagcagtggtagtagattaaaattatccgttgaaaaaagatcaataagatcagaacct
acaattggtaagatcagacatgatatcgataagaaattaatcaagtatcaaccttcttac
attgtttctaagacattgaaatttcatcccttatttttgtctaaaataacttccaagtac
ttagttgcaggtattgacggtagacgtgtcgatgttggtattccaattaaatttgaaggt
cgccgtcaaaaagttctgggttatgctagaagaagtgtgaaaggttgggaatactccaat
ttaactatagacctattaaatcattataagaaaaccttcccagaattcattgacaagtta
gccagattaaaaacaaatgatattccaaatatcggtgaactatatccagaattaacaaat
gtcaaggctgctgaattattggatcgagttaagacctggttaaagaatgctactgaaaat
tttgttactgtttcattagaaagtgattctttatcaaaggcttctatcaatgctattgaa
gaagcaatcattccatattctacttttgctgaacaaagtgaaataaaacaattagcaaag
gttccaagggaagccattcttgatcctaaagaatctttgactaagttgcgttcccaaaga
tttgacttgggtgatcgtgttatctatatccaaagttctggtaaagttccattattttct
aagggtactgttgttggttacactacattgccacatagtatttcagttcaagtcctattt
gataatgaaattgttgctggtaacagatttggtggtagattgagaactaatcgtggtttg
ggattagacgcatcttatttattaaacataagtaaccgtcaattcatttatcactctaaa
gcttctaaaaaaactggaggagaacaaaaaaacactgctgcttctattgaagctaaaaaa
gaaagagttgctaaaattagaactgctagagctcaagatttgttaacacatattaatgac
aacaaatctaacacttctgcagctaatgatgcgaatatcgcaccagctgccgctttgcca
ccaataagacatgctgcaaaccatatctatagcgctgttttaaatcaatattctaacgaa
ggtccagcaactgggaatcctcaaccaattagtgaatcgaatggtgataatcaagctggt
ttaccatatcatttacctcctggttttgttccaccaaatccaatgatgttctcaccacca
ccacatggcccaacaggcttgccactcccaatgggcaatttcatgcacccacctcaagga
atgtttccaccaccagttccaatgccaatgaatggtgctatgcaacatccaccagttgac
caaaaaggtagtgctgaactaaagtcttttattaaaaacaagaaacctcaggatgacaat
aagaagaacacttcccataaaaagcacccacaacaaaacaagaacagaaacaatggtaag
aagacagccaaaaatccttcaaataaagatacaaattag
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