Tetrapisispora phaffii: TPHA_0H01140
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Entry
TPHA_0H01140 CDS
T02235
Symbol
TPHA0H01140
Name
(RefSeq) hypothetical protein
KO
K13126
polyadenylate-binding protein
Organism
tpf
Tetrapisispora phaffii
Pathway
tpf03015
mRNA surveillance pathway
tpf03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
tpf00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
TPHA_0H01140 (TPHA0H01140)
09123 Folding, sorting and degradation
03018 RNA degradation
TPHA_0H01140 (TPHA0H01140)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tpf03019
]
TPHA_0H01140 (TPHA0H01140)
03041 Spliceosome [BR:
tpf03041
]
TPHA_0H01140 (TPHA0H01140)
Messenger RNA biogenesis [BR:
tpf03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
TPHA_0H01140 (TPHA0H01140)
mRNA cycle factors
Stress granule specific factors
TPHA_0H01140 (TPHA0H01140)
Spliceosome [BR:
tpf03041
]
Complex C
Other components
Complex C specific factors
TPHA_0H01140 (TPHA0H01140)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RRM_1
CT47
Motif
Other DBs
NCBI-GeneID:
11533994
NCBI-ProteinID:
XP_003686756
UniProt:
G8BX18
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All DBs
Position
8:complement(251773..254277)
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AA seq
834 aa
AA seq
DB search
MSSSNNSSDNNNILINSELEQLANINQLTIRIGWLALDNSFLYDLEKLIFDNKGNIIPLL
SIENYEFLNDEQRLRILKENSDIFLFEKGLKEIENSFAKSLKINQDEEDGDEGCVKEEEE
EEEEEDWEYDYVVQSHFKNLNNLNAVVGIVTGLLKENKNISKWSISSNEHALSHPGNLYI
KGIPKEMTIDDILPVFLNFGKVISLKIKTDQSGNSLGYGFLSFQLGSQASLCKNELNGTN
LNGSKLFINYHVERKERERIYWDNLRERNFNDKKFKGIFIGNLPIYDEDKNLVSPEKVFE
KFCMVLKDVTPIDSIVSYYFPKENSNSNIDYGDDDNADTEQPKGKINVETCPLQNEEIPL
KGYGFIKFISHDHALAAVEILKDFQWLGNKIIVNKAIQSRPHHTSFNGSPPNVNNNNLAY
GYDNDVNDNYYGDNIPISLSSSSLSSANNKTNSTKNKNGNGMKYYHPGKKQINNAIPNYY
NYNPHPTTGMFQRNFQTSPYVQYIPYSPVNSFDSSESDIYNLSSSPRAVSRSSITATSPE
NVNDLFENHEYSYNANPSTVANLNHGSSFNRNTFHYNYNYSPFYNHNGNYKFVSGGSKNV
LFPRPLNDQQESNLYIKHIPLSWSDSDLYDFYKVFGEVISAKIITVGGSKNKVTKSERTD
LEIPVGSSKGYGFVYFKNTLDASKAIIETNRYKIDKDHILHVSFAQKRSKLSDYEDCVSS
NIDKKNFTKVANGPNPKSNRAIFVDYSNLEYSDQRFMYNNVMNQSMHPMNIYQIGASNYI
PQMNNWNFHMMPSPLHGGMPAHNFGQRMSVPYIIRAPVSAASDFDVGNSKYSRD
NT seq
2505 nt
NT seq
+upstream
nt +downstream
nt
atgtcttcatcaaataacagtagtgataataacaatattttgataaattcagaactagaa
caattagcaaatataaatcaattgaccataaggattggatggttggctctagataattca
tttttatatgatttagaaaaattaatattcgataataaaggtaatatcatacctttatta
tctattgaaaattatgaatttttaaatgatgagcaaagattaagaattttaaaagaaaat
agtgacattttcttatttgaaaaaggtttaaaagaaattgaaaattcattcgccaagtct
ttgaaaattaatcaagatgaagaggatggggatgaaggatgtgtaaaggaggaggaggag
gaggaggaagaggaagattgggaatatgattacgttgttcaatcacattttaaaaatttg
aataatttaaatgctgtcgtcggaatcgtcacagggttgttaaaggaaaataaaaatata
agtaaatggtcgatctcttcaaatgaacatgctctgtcacatccgggaaatttatatatc
aaaggtataccaaaagagatgaccatagatgatatattgccggtttttttgaattttggg
aaggtaatatctttgaaaattaaaacagatcaatcaggtaattcattaggttatggtttt
ttgtcgttccagttaggttcacaagcttcactatgtaaaaatgaattaaatggcactaat
ttgaatggttcaaaactttttattaattatcatgttgagagaaaggaaagagaaagaatt
tattgggataatttaagagaaagaaattttaatgataaaaaatttaaaggaatattcatt
ggtaatttaccaatttatgatgaagataagaatttagttagtcccgaaaaagtgttcgaa
aagttttgtatggtattaaaagatgtgacgcccattgattcaattgtatcgtattatttt
ccgaaagaaaacagtaactcaaatattgactatggagatgatgataatgcagatacagaa
caacctaagggaaagataaacgttgaaacctgtccattgcaaaatgaagaaattccatta
aaaggttatggttttataaaatttataagtcatgatcatgcattagctgctgtagaaatt
ttaaaagattttcaatggttaggaaataaaattattgttaataaagctatacaaagcaga
ccccaccatacttcatttaatggctcacctcctaatgttaacaataataatttagcatac
ggttatgataatgacgtaaatgataactactacggggataacatacctatttctttatca
tcatcttctttatcatctgctaataataagactaatagtactaaaaataaaaatggaaat
ggcatgaaatattatcatcctggcaagaagcagattaataatgccattccaaattactat
aattataatcctcatccaactacaggcatgtttcaaaggaatttccaaacaagtccgtat
gttcaatatattccttactctcctgtgaattcatttgatagctcagaatcagatatatat
aatttgtcatcatccccaagagcagtatctaggtcttctattacagctacatcgcctgaa
aatgtaaatgacttgtttgaaaaccacgagtactcatataatgctaatccttccactgtg
gcaaatttgaatcatggaagcagttttaacagaaacacatttcattataattacaattac
tctcctttttacaatcacaatggcaattataaatttgtcagtggaggaagcaaaaacgta
ttgttcccaagaccattaaatgatcagcaagaatcgaatttgtatattaaacatataccg
ttatcttggagcgactccgatttatatgatttctataaagtttttggtgaagtaatcagt
gccaaaataattacagtcggtggtagtaagaataaagttactaaatctgaacgtactgat
ttggaaattcctgttggatcttcaaaaggctatggatttgtctactttaagaatacttta
gatgcttcaaaagcaataatcgaaacaaacagatataaaatagataaggaccatattctt
catgtctcatttgcccaaaagaggtccaaattatcagattatgaagattgtgttagcagt
aatattgataaaaaaaattttactaaagttgcaaatgggcctaaccctaaaagtaataga
gcaatatttgttgactattcaaatttagagtattcggatcaaagattcatgtataataat
gttatgaatcaatccatgcatccaatgaatatttatcaaattggagcatctaattatatt
ccccagatgaacaattggaacttccatatgatgccgtcaccccttcatggtggaatgcca
gctcataactttggccaacgcatgagtgtgccttatataattcgtgcgccagtgtcagca
gcaagtgattttgatgttggaaattcaaaatatagtagagattag
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