Tetrapisispora phaffii: TPHA_0I01340
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Entry
TPHA_0I01340 CDS
T02235
Symbol
TPHA0I01340
Name
(RefSeq) hypothetical protein
KO
K12879
THO complex subunit 2
Organism
tpf
Tetrapisispora phaffii
Pathway
tpf03013
Nucleocytoplasmic transport
tpf03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
tpf00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
TPHA_0I01340 (TPHA0I01340)
09122 Translation
03013 Nucleocytoplasmic transport
TPHA_0I01340 (TPHA0I01340)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tpf03019
]
TPHA_0I01340 (TPHA0I01340)
03041 Spliceosome [BR:
tpf03041
]
TPHA_0I01340 (TPHA0I01340)
Messenger RNA biogenesis [BR:
tpf03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
TREX complex
TPHA_0I01340 (TPHA0I01340)
Spliceosome [BR:
tpf03041
]
Complex C
Other components
EJC/TREX
TPHA_0I01340 (TPHA0I01340)
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
TPHA_0I01340 (TPHA0I01340)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
THOC2_N
Tho2
Thoc2
DUF3829
Motif
Other DBs
NCBI-GeneID:
11532893
NCBI-ProteinID:
XP_003687075
UniProt:
G8BXL3
LinkDB
All DBs
Position
9:complement(300508..304839)
Genome browser
AA seq
1443 aa
AA seq
DB search
MLASRLNALAHNNISFEQSRNIFSEAFINDWSSKSLELISQYLEVTDVDEKHDWLRNFFI
ELFQILYLPNLPNNVTIQLLAQLINELVQKSNDSSELIGMAFVSASSTYSKEDDNRLLLL
AKEIPVLYDELFKFSPISSKLMTKDQMVLMRHLLKKTKFELKKYNLLFECSSGYGNLIAL
LYMAFHDIDKIDKIDFYSHELSHVMGKFSLDSMRSLDLILRISSEFVTEDYNFILKLLQA
TDFWPNEKLSNSNISNSDHLSENVIVSNVIAFTINSFAMDDPTKLDSIRYIDMCCILIKS
KFVHFSHIWIKLSPTSKEFVKQLQEYQDKLEKESMQGVSNPLAMAAALSLEDDEDEEANG
RKVDDNKLTQKSPNSSEGKKTSDDHESKAQNTTNNNNIDITGSVHILFLERLLSIGCYDA
VVQIFREHPSLMSVNKLIPKLFARLFEYRINSLYENTCLSQIENLTGALKDTVNESDLIS
HRSKLINYELTHDPYETTFLNTKFKFFYEDWKSELAIIESIEKLFEESHSFFYTIGPYLS
HATILLSKLVRLGISDIKDEKDDELRVSKIDKWIDYTRKFIMPTLPLLENCPSVATNIYE
LLSMFSFEKRYFLYNEVLSKLSKDDVNVKIGFNRAAREAKRLLKVLNTDNIEQEARNFSC
VLSTNPLATLTNVVEQVENYDKVTELVIITAKYFNNFAYDVLQYIILQRISQQRNTVQDD
GVNPTSWVTRISSFIAGLTKKCPNMNIDKIITFIIKTLHKGNIIAISILKELLHTVGGIR
DLNEVNIKQLKMLNSAPQLQSIARSLIYDTRDQNSEQSQKLIKIFKEQNSLSEVIILLNN
LILEANSLPLHYKILSSNCDELNSLLWSFIELVQYTMSKDEFRETIIPFRLLSNNHRISV
PWLFHLWRSNIGSNKESNANIFLNMKDDVTFTDVDTSLIDYELFIYFWTFDLYNMHHDSA
LYKEAELILEKELKSETNSRKISHLKKQINELSNSSGVHQRDFNETTETLKNKSNTWENS
LDEKGIEMFLQYCIIPRSLFNPLDSLYSSYFLLQNFEVEKLLEIASTLFNSDILGTLLFS
CTSLEAGNLGIFFNSFLSKIEEIREKNGIDHPKAKDIYSWYYNFLKQIISTLLNNNYMSI
RNGIEFMKYVTNIFPIVDDHIHLLIKTLERRLSDEKREDIKLPSTALLGHLKARLKKAKT
KFDFYVLTGSEKESHDTYIQEVKEIEIAKSAEDNVKKQDTLRKRIEASKPSAVKSEISIH
KEPSSVLSTPSPVNNNVFQVVRLIKEISYHISADNFNRVLSLLDDNVMSQKIKDLSKRTN
SVNYYKSQLLNLLEDHFRNLSRGASDEQLELQLKDLKLLISKLDHILGRTSTPLYSENSS
AHTSRYNRDSTNDQNIDSKRDFRTASNYRHNIGKSTIQVDQNKAHGDNRVPKRKLRIVNL
YIQ
NT seq
4332 nt
NT seq
+upstream
nt +downstream
nt
atgctagcatcaagattgaatgcattagcacataataatatctcttttgaacaaagtaga
aatatattcagtgaagcctttattaatgattggtcaagcaaatctttagaactaatttcg
caatacttagaagttactgatgttgatgagaaacacgattggttaaggaatttcttcatt
gaattattccaaatattgtatttacctaatttaccaaacaatgttacaatccaactttta
gcacaattgattaatgaactagttcaaaaatcaaatgactctagtgaattaattggtatg
gcttttgtttccgcttcttcgacgtattcaaaagaggacgacaacagacttttgttatta
gcaaaggaaatacctgtattatatgacgaattattcaaattcagtccaatttcatcgaaa
ttaatgacaaaagatcaaatggttttaatgagacatttgttgaagaaaacaaaatttgag
ttgaaaaaatataatttacttttcgaatgctcttcaggttatggtaatctaattgctcta
ttatatatggcttttcatgacatcgataaaattgataagatcgacttttactctcacgaa
ttgtcacatgtgatgggtaagttttctttggatagtatgcgttctcttgatttgatatta
aggatttcaagtgaatttgttacggaagattataatttcattctaaaattgcttcaagct
accgatttttggccaaatgaaaagctctctaactcgaatatatcaaattctgatcattta
tcagagaacgttattgtttccaatgttatcgcattcactataaactcatttgcaatggat
gatcctaccaagctagactccattcgttatattgacatgtgctgtattttgataaaatct
aaatttgttcatttttctcatatttggataaaactctctccaacttcaaaagaatttgtg
aaacaactgcaggaataccaagataaattagagaaagaatcgatgcaaggtgttagcaat
ccacttgcaatggcagcagctctatcattagaagatgatgaagacgaagaagctaatggc
cgtaaagttgatgacaataaattaacacaaaaaagtccaaactcatctgaaggtaaaaag
acatccgatgatcatgaatcaaaagcacaaaacactacaaataataataatattgatata
acgggtagtgttcatattttatttttagagcgattattatccattggatgttatgatgca
gttgtccaaatttttagagagcacccaagcttaatgtcagttaataaattaatcccaaag
ttattcgcaagattatttgaatatagaataaacagcttatatgaaaatacatgcttatca
caaatagagaatctgactggtgctttgaaggacactgtaaatgagagcgaccttatttca
cacagatctaagttaatcaactatgaattaacacacgatccgtatgagacaactttcctt
aatacaaagttcaaattcttttatgaagactggaaatctgaattagcaattatagaatcg
attgaaaaattatttgaagaatctcattcatttttctacacaattggaccatatttatct
catgccacaattttgttgtcaaaactagttagattaggtatttctgatattaaagatgaa
aaagatgatgaattgcgtgtttcaaaaattgataaatggattgattatactagaaaattt
atcatgccaaccctaccattattagaaaattgtccttcagttgcaactaatatatacgag
ctattgagtatgtttagctttgaaaaaagatatttcttgtacaatgaagttttgagtaaa
ttatcaaaggacgatgtgaatgtgaaaattggattcaacagggctgcaagagaagccaag
agattgttgaaagttttaaatactgacaacatagaacaagaggctaggaactttagttgt
gttctctctacaaatcccttggccactttaactaatgtagttgagcaagttgaaaattac
gacaaagtaactgagttagtcattataacggctaaatatttcaataactttgcatatgat
gtattacaatacattatattgcagcgtatatctcagcaacgtaacacagtccaagatgac
ggagtgaacccaactagttgggttacacgtatttcatcatttatagctggtttgacgaaa
aagtgtccaaatatgaacatagataaaattataacttttattattaaaacgttacacaag
gggaatattattgctatatcgattttgaaagagttattgcatacagtaggaggcattaga
gatttgaatgaagtgaacataaaacagctgaaaatgctaaattcagcaccacaattacaa
agtattgccagaagtttaatttatgatactagagatcaaaatagtgagcaaagtcaaaaa
ttaataaagatattcaaagagcaaaattccttatccgaagttataatactacttaataat
ttaattttggaagcaaattcactcccattacattacaaaatcttatcatctaattgtgat
gaattaaacagcttgctatggtcatttattgaattggttcaatacacaatgagcaaagat
gaatttagagagacaattatccctttccgactattatcgaataatcaccgtatatcagtt
ccctggttatttcacttatggagatcaaacattgggagtaataaggaatcaaacgccaat
atatttcttaatatgaaagatgatgtcacatttactgatgttgacacatctttgattgac
tatgaactattcatctatttttggacttttgacttatataatatgcatcatgatagtgct
ctttataaagaagcagaattaattttagagaaagaactaaaatcagagaccaattctcgt
aaaatttctcatttaaagaaacaaattaatgaattatcgaattcttctggagttcatcaa
agggatttcaatgagacgacagaaacgttaaagaataagtctaatacctgggagaattca
ttagatgagaaaggtatagaaatgtttttacaatattgtattattcctagatcattattc
aatcctttagattcattatattcaagctacttcctgctacaaaactttgaggttgaaaaa
ttacttgaaattgcttcaactttgtttaattctgatattttaggcactcttttattcagt
tgcactagcctagaagccggtaatttgggaattttctttaattctttcttaagtaaaatt
gaggaaattagagagaaaaacggtatagaccatcctaaagcaaaagatatttacagttgg
tattacaattttttgaagcaaattatatccaccttattgaataataattatatgtctatc
agaaacggtattgaattcatgaaatatgttactaatatctttccaatcgtagatgaccat
attcatttactaattaagacactagaacgcagattatctgacgaaaaaagggaagatatc
aaacttccatctacggcattacttggtcatctaaaagctcgtttaaagaaagctaaaact
aaatttgacttttatgtgctaactggttcagagaaagaatctcatgatacttatatccaa
gaagtcaaggaaatcgagattgctaaatctgccgaggataatgtaaagaaacaagatact
ttgagaaagagaattgaagctagtaaacctagtgctgtcaaatcagagatttctattcac
aaggaaccttcttctgttttatctacaccttctcctgtcaacaacaatgtattccaagta
gtgaggttgataaaagaaatatcgtatcatatttctgccgataatttcaacagagtgtta
tctttgttggacgataatgtaatgtctcaaaaaattaaagatttgagtaaaagaaccaac
agcgttaattattataaatctcaacttttgaatttattagaagatcactttcgtaattta
tcgagaggagcttctgatgaacaattagaattacaactgaaagatttgaaattactcatt
tcaaaacttgaccatatcttaggcagaacatctactcctctttattctgaaaacagttcg
gctcatacaagtagatataacagagactccacgaatgatcaaaacatcgacagtaaacgt
gattttagaactgcttcgaactatagacataatattggcaaatctacgatccaagttgat
caaaacaaagctcatggagataacagagtaccaaagagaaaattaaggatagtgaacctt
tatatccaatga
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