Tetrapisispora phaffii: TPHA_0J00370
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Entry
TPHA_0J00370 CDS
T02235
Symbol
TPHA0J00370
Name
(RefSeq) hypothetical protein
KO
K12591
exosome complex exonuclease RRP6 [EC:3.1.13.-]
Organism
tpf
Tetrapisispora phaffii
Pathway
tpf03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
tpf00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
TPHA_0J00370 (TPHA0J00370)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tpf03019
]
TPHA_0J00370 (TPHA0J00370)
Messenger RNA biogenesis [BR:
tpf03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Exosome cofactors
TPHA_0J00370 (TPHA0J00370)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol_A_exo1
PMC2NT
HRDC
Caleosin
CofD
Motif
Other DBs
NCBI-GeneID:
11533003
NCBI-ProteinID:
XP_003687294
UniProt:
G8BYB8
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Position
10:complement(81371..83602)
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AA seq
743 aa
AA seq
DB search
MNADELLPLVVSSVRAASALAAQDVDFYRSLDKEIASSLTNTSQKVTDMINSIISSVDEN
SEGLVEGKENLDESWKDIGNLLDSLFELADHSIDALSKASQKSSNDPKMKYLNDSLNFES
DNVTRLSKPQLNFSVPVDNSETHPFRPLLTDKPNAVVPLDEVLKIVDGTEDTPQHYPQPY
ETEIDKQEYNEQVLQFSDPIPSKVWEETEAIWVDNEESLAAMLNELKTATELAVDLEHHD
FRSYYGITCLMQISTRNTDYLVDTIALRDKLQVLNVVFTDPKITKILHGAFMDIIWLQRD
LGLYIVSLFDTYHASRALGFPRHSLAYLLERFAHFKTSKQYQLADWRTRPLSKAMNAYAR
ADTHFLLNIFDQLRNMLIQEDKLASMLHESRKVAKRRFEYSKYKPTLPSSAVFSPTESDM
PWRSMIYQYNIPSQKVELVKRLWEWRDTIARRDDESPRYIMPNQLIASLVEYVPTNPAGV
ISVNRMMTDPVRSNAKAIANLIKSTLEDMKNNNISTTVVSTTAKDKETSSNDLSTSQIKF
IVSQFENILEKYSSNNSNLNDVTSKEGKDSLVFSKIFNSRDDIITYDKGTKHLITEQQLS
DRQKEVDAAMKQAEEIAFSMEVQDTHKESMKQPFPEPEEVISQSHLPAFEDKEEQEDLDE
IIVLKDTKDRRNRQHRGRGRSADSDHTVIDYSKGDKILSQDNRRRTPNKRKYDPFSADNN
ENALQGAKRRRPTAKNRNVSFKR
NT seq
2232 nt
NT seq
+upstream
nt +downstream
nt
atgaatgctgacgaactacttcccttggtagtaagctcagtcagggctgcttcagcttta
gctgcccaagatgttgacttctatagaagtttagataaagaaattgcttcatctctaaca
aatacatctcaaaaagttactgatatgataaatagcataatatcttcagtcgatgaaaat
agtgaaggtcttgtagaaggaaaagaaaatttagatgaatcatggaaagatattggaaat
ttgttagatagtttgtttgagctagctgatcattcaattgatgctttatcaaaagcctca
cagaagagttctaatgacccaaaaatgaaatatttaaacgattcattaaattttgaatca
gataacgttacaagactttccaaaccccaattaaatttttcggtgccagttgataattca
gagacacacccattcaggcctttattaaccgacaaaccaaatgcagttgtacctttggat
gaggtattgaagattgtagatgggactgaagatacacctcagcattatcctcagccttat
gaaacagaaattgataaacaagaatataacgaacaagtattgcagttttctgatccaatc
ccatctaaggtgtgggaagagactgaggctatttgggtagataatgaggaaagcttagct
gctatgttaaatgaattgaaaactgctactgaattagcagttgatttagaacaccatgac
ttcagaagttattatggtattacatgtttaatgcaaatcagtactagaaacacagattat
ttagttgacaccattgctttgagagataaattgcaagttttgaatgtagttttcactgat
cctaaaatcactaaaattttacatggggcattcatggatataatttggttacagagagat
ttaggattgtatattgtcagtttgtttgacacctatcatgcatctagagcccttggattt
ccaagacatagtttagcatacctattggaaaggtttgctcattttaaaacttcaaaacaa
tatcaactagcagactggagaacaagacctctttcaaaggcaatgaatgcttatgcaaga
gctgacacgcatttcttattaaatatatttgatcaactaagaaatatgttaattcaggaa
gataaactagctagcatgttgcatgaatctcgtaaagtggcgaaaagaagatttgaatat
tctaaatacaaaccaacattgccaagctctgcagttttttcacctactgaaagtgacatg
ccttggcgttctatgatataccaatataatataccttctcaaaaagttgaattggttaaa
aggttatgggaatggagagacacaattgctagaagagatgatgaatccccaagatatatt
atgccaaatcaattaattgcctcgttagttgagtatgtaccaactaacccagcaggcgtc
atttctgtaaatagaatgatgaccgatccagtaagatcaaatgcaaaggcgattgccaat
ttaatcaaaagtacacttgaggacatgaaaaataataacatttctacaacagtagtatcc
accacagctaaggataaagaaacatcttcaaacgatttaagcacttctcaaattaaattc
attgtttctcaatttgaaaatatcttagaaaaatattccagtaacaattctaatttgaac
gatgtgacatcaaaggagggcaaagactctctagtatttagcaaaatattcaattctaga
gatgatataataacatatgacaagggaactaagcatttaataacagagcaacagctaagt
gatcgtcaaaaagaagtagatgctgcaatgaaacaagctgaagaaattgccttttccatg
gaagtccaagatacgcataaagagtctatgaagcaaccatttcctgagccagaagaagtc
atttcacaatctcatttgcctgcttttgaagataaggaggaacaggaagatttagatgag
attattgtcttaaaagatactaaagacagaagaaatagacaacatagaggacgtggtaga
agtgctgactcagatcatacagtaattgactacagtaaaggtgacaaaattttatctcaa
gataatagaagaagaactccgaacaaaaggaagtatgatccattctctgcagataacaat
gagaatgctttacaaggagcaaagagaagaagaccaacagccaagaatagaaatgtttct
ttcaagaggtaa
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