Tetrapisispora phaffii: TPHA_0J01240
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Entry
TPHA_0J01240 CDS
T02235
Symbol
TPHA0J01240
Name
(RefSeq) hypothetical protein
KO
K12619
5'-3' exoribonuclease 2 [EC:3.1.13.-]
Organism
tpf
Tetrapisispora phaffii
Pathway
tpf03008
Ribosome biogenesis in eukaryotes
tpf03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
tpf00001
]
09120 Genetic Information Processing
09122 Translation
03008 Ribosome biogenesis in eukaryotes
TPHA_0J01240 (TPHA0J01240)
09123 Folding, sorting and degradation
03018 RNA degradation
TPHA_0J01240 (TPHA0J01240)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
tpf03021
]
TPHA_0J01240 (TPHA0J01240)
03019 Messenger RNA biogenesis [BR:
tpf03019
]
TPHA_0J01240 (TPHA0J01240)
03009 Ribosome biogenesis [BR:
tpf03009
]
TPHA_0J01240 (TPHA0J01240)
03016 Transfer RNA biogenesis [BR:
tpf03016
]
TPHA_0J01240 (TPHA0J01240)
Transcription machinery [BR:
tpf03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
TPHA_0J01240 (TPHA0J01240)
Messenger RNA biogenesis [BR:
tpf03019
]
Eukaryotic type
mRNA degradation factors
5'-3' decay
5' exonucleases
TPHA_0J01240 (TPHA0J01240)
Ribosome biogenesis [BR:
tpf03009
]
Eukaryotic type
Pre-60S particles
RNases
TPHA_0J01240 (TPHA0J01240)
Transfer RNA biogenesis [BR:
tpf03016
]
Eukaryotic type
tRNA degradation factors
Rapid tRNA decay (RTD) pathway factors
TPHA_0J01240 (TPHA0J01240)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
XRN_M
XRN_N
Motif
Other DBs
NCBI-GeneID:
11532957
NCBI-ProteinID:
XP_003687380
UniProt:
G8BYK4
LinkDB
All DBs
Position
10:complement(292710..296051)
Genome browser
AA seq
1113 aa
AA seq
DB search
MGVPSFFRWLSRKYPKIISPVLEETPQIVDGVALPIDYSSENPNGELDNLYLDMNGIVHP
CSHPENRPPPETEDEMLLAVFEYTNRVLNMARPRKVLMIAVDGVAPRAKMNQQRARRFRS
ARDAKFENEAREEILKDKEAAGQVIDEAVKQKKTWDSNAITPGTPFMDKLAAALRYWTAF
KLSTDPGWKNLQVIISDATVPGEGEHKLMNFIRAQRADPEYNPNTTHCIYGLDADLIFLG
LATHEPHFKILREDVFAQGSKPKKHNFKDGLDMTEEEKQLITKEDSQKPFLWLHINVLRE
YLSAELWVPRLSFPFDIERAIDDWVFMCFFCGNDFLPHLPCLDVRENSIDILLDIWKRIL
PNLKTYMTCDGELNLESVELLLSQLGSREADIFKTRHLQEVRKKESMERKKQQRIDRKNI
SKGQDRHPTNVTEQLQLYDTSGALAAGSWNLTTSDMVRLKKELMLANEGDKDAIAIVKAQ
NELNNKLEKDIKEQGVEKIIDEANKANLSAAELIRKKINARKHTLETEQETENDTSKKIK
TDENSKTTDTLDDEIKNEIISEILDEEAEEEEEEENMEENVKNEIEQNNKQEHLLSAISN
VPSANINSDTVSGVIDTDDYVKLYEPGFRERYYASKFNVDEHDIDQLKKDVVRYYIEGVS
WVLLYYYQGCASWNWYYPYHYAPFAADFTNLTDISIKFDLGEPFLPFEQLMSVMPAASGH
TLPEIFRPLMSDPKSEIIDFYPEQFPIDMNGKKMSWQGIALLPFIDETRLLKAVRSKYEF
LSDQEKSRNVRKKAILVISNKNANYDQFVKDMYTEKVDAEKEFFFSHFKSGLSGFVSKDT
EGFELNSKLLCPIETDDLPTISTNLFLKMGYRLLPLPSNNKSLLLNGFIPSTPMLSQYDI
DSIKSRQNRNFYRNTRNFGDEMKENKVPSGPSGTTQYKPRMGGYKSYFHFEEQGNRAPQM
NTGYIGYNNNYADSYNNDNRHYNNNDYNNNNNYNNNYNNYNNNDYNNNNNNYNNYNNYNN
YNNNYNRNYNNHQNNSQSSNRYDKGNYGQFQNNNYGGRFNPQNYRGNNNGNYGNSGNNSQ
RGGYDNRRYGGGYNNKRNENSNRDRPNQNQRRY
NT seq
3342 nt
NT seq
+upstream
nt +downstream
nt
atgggtgttccatcgtttttcagatggttatcaaggaagtatccaaagattatctcgcct
gtgttagaagagacacctcagatagttgatggtgttgctttaccaattgattattcttcc
gagaatcctaatggcgaattagataatttatatctggatatgaatggtattgtccatccg
tgttctcatccagagaacagacctcctccggaaactgaagatgaaatgttgttggccgtt
ttcgaatatacaaacagagtcctgaacatggcaagacctcgtaaagtattgatgattgct
gtagatggtgttgcacctcgtgcaaaaatgaatcaacaaagagcacgtagatttagaagt
gccagggatgcaaaatttgaaaatgaagctagagaagaaattttgaaagataaggaggct
gctggtcaagtgattgatgaagctgtgaaacagaagaaaacttgggattcaaatgcaatt
acacctggtacaccatttatggataagttagcggcagctttacgttattggactgccttt
aaattgtcgacggacccaggttggaaaaacttacaagttattatcagcgatgccactgta
ccaggtgaaggtgagcataagttgatgaattttattagggcccaacgagctgatccagaa
tataatccaaatacaacacattgtatttatggtttagatgcagatttaattttcttgggt
ttagctactcatgaacctcattttaaaatattgagagaagatgtttttgcccaaggcagt
aagccaaagaaacataattttaaagatggtctagatatgactgaagaagaaaaacagtta
attacaaaagaagactctcagaaaccattcttgtggttgcatattaatgttttaagagaa
tatttatcggctgaattatgggttccacgattatcatttccatttgatattgaaagagcg
attgatgactgggttttcatgtgtttcttctgtggtaacgacttcttgccgcatctaccg
tgcttagatgtcagggaaaatagtattgacattctgttggatatatggaaaagaatacta
ccgaatctgaaaacatacatgacctgtgatggtgaattaaatttagaatctgttgaactt
ttattgagccaactaggttctcgtgaggcagatatattcaagacaagacatttgcaagaa
gttagaaagaaagaaagcatggaaaggaaaaaacaacaaagaatagacagaaaaaatata
tctaaaggacaggatagacatccaacaaatgttactgagcagttacaattatatgatacc
agtggtgcattagctgcaggttcatggaatttgacaaccagtgatatggtcagactaaaa
aaggaattgatgctggccaatgaaggtgataaagatgccattgctatcgtcaaagcgcaa
aatgagctaaacaacaaacttgaaaaggatattaaagaacaaggcgtagaaaaaataata
gatgaagccaacaaagcaaatctatctgctgcggaattaataagaaaaaaaattaatgcc
agaaaacatactcttgaaactgaacaagaaactgaaaatgataccagtaaaaaaattaag
acagatgagaattcgaaaacgactgataccttggatgatgaaataaaaaatgaaatcatt
tcagaaattctggatgaagaagcagaggaagaagaggaagaagagaatatggaagaaaat
gttaaaaatgaaatagaacaaaataataagcaagaacatttattgagtgctatttctaac
gtaccctccgctaatatcaattcggataccgtaagtggtgtgattgatacagacgattat
gtaaaattatatgaaccaggtttcagagaaagatattatgcttcaaaattcaatgtagat
gaacatgatattgatcagttaaaaaaagacgtagtaagatattatatcgaaggtgtttct
tgggttttattatattattaccaaggatgtgcctcatggaattggtattatccataccac
tatgcaccatttgcagctgactttaccaatttgacagatatatctattaaatttgactta
ggcgaaccatttttaccatttgaacaactgatgagtgttatgcctgctgcatcaggtcat
acattacctgaaattttccgtcctctgatgagtgatcctaaatcagaaatcattgacttt
tatccggaacaatttcctattgatatgaacggtaaaaagatgtcgtggcaaggtattgca
ctgttgcccttcattgatgaaacaagattattaaaagctgttcgctctaagtatgaattt
ttaagtgatcaagaaaaatctagaaatgttagaaaaaaggcaattttggtgataagtaat
aaaaatgctaactatgaccagtttgtaaaggacatgtatacagaaaaagtcgatgctgag
aaagagttctttttcagtcattttaaaagtggtctaagtggtttcgtaagtaaagatacg
gaaggttttgaacttaacagtaaactgttgtgtccaattgaaacggatgatctcccaact
atttctaccaacctatttttgaaaatgggctataggttattacctttaccttccaataac
aaatctcttctattaaatggttttattccttcaactccaatgttatcacaatatgatata
gattctataaagagtagacaaaaccgcaacttctatagaaatacaagaaactttggggat
gaaatgaaagaaaataaagtaccttctggaccaagtgggacaactcaatataagccaaga
atgggtggttataagtcatattttcactttgaagaacaaggaaatagagcaccacaaatg
aatacgggatatattggatacaataataattatgctgatagttacaataatgataataga
cattataataacaatgactacaataacaataacaactataataacaactataataattat
aataacaatgactacaataacaataacaataattataacaactataataattataataac
tataataataactataataggaattataataaccatcagaacaactcacaaagttcaaat
cgttatgataaaggtaattatggccaatttcaaaacaataactatggaggacgttttaac
cctcaaaattatagaggtaacaataacggaaattatggaaatagtgggaataattcacaa
agaggtggttatgacaaccgtagatacggtggtggttataacaataaaagaaacgagaat
tcgaacagagatagaccaaaccaaaatcaaagaagatattga
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