KEGG   Tetrapisispora phaffii: TPHA_0J02900
Entry
TPHA_0J02900      CDS       T02235                                 
Symbol
TPHA0J02900
Name
(RefSeq) hypothetical protein
  KO
K03015  DNA-directed RNA polymerase II subunit RPB7
Organism
tpf  Tetrapisispora phaffii
Pathway
tpf03020  RNA polymerase
tpf03420  Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:tpf00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    TPHA_0J02900 (TPHA0J02900)
  09124 Replication and repair
   03420 Nucleotide excision repair
    TPHA_0J02900 (TPHA0J02900)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:tpf03021]
    TPHA_0J02900 (TPHA0J02900)
   03019 Messenger RNA biogenesis [BR:tpf03019]
    TPHA_0J02900 (TPHA0J02900)
   03400 DNA repair and recombination proteins [BR:tpf03400]
    TPHA_0J02900 (TPHA0J02900)
Transcription machinery [BR:tpf03021]
 Eukaryotic type
  RNA polymerase II system
   RNA polymerase II
    Pol II specific subunits
     TPHA_0J02900 (TPHA0J02900)
Messenger RNA biogenesis [BR:tpf03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   mRNA cycle factors
    P-body specific factors
     TPHA_0J02900 (TPHA0J02900)
DNA repair and recombination proteins [BR:tpf03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     DNA-directed RNA polymerase II complex
      TPHA_0J02900 (TPHA0J02900)
SSDB
Motif
Pfam: S1 SHS2_Rpb7-N RNA_pol_Rbc25
Other DBs
NCBI-GeneID: 11532940
NCBI-ProteinID: XP_003687545
UniProt: G8BY60
LinkDB
Position
10:complement(643004..643519)
AA seq 171 aa
MFFIKDLSLNIILHPSFFGPRMKQYLKTKLLQEVEGSCTGKFGYILCVLDYDKIEIERGR
ILATDGSAEFTVKYRAVVFKPFKGEVVDGTVVSCSQHGFEAQVGPMKVFVTKHLMPQDLV
FNAGSNPPSYQSAEDVITIKSRVRVKIEGCISQVSSIHAIGSIKEDYLGAI
NT seq 516 nt   +upstreamnt  +downstreamnt
atgttttttataaaagatctatcattgaatattattttgcatccatccttttttggccct
cgtatgaaacaatacttaaaaactaaattattacaagaagtagaaggttcatgtacaggt
aagtttggttatatattatgtgtcctagactatgacaaaattgaaattgaacgtggtaga
attttagcaactgatggttctgcagaatttacagtaaaatacagagcagttgttttcaag
ccatttaaaggtgaagttgttgacggtaccgttgtgtcatgctctcaacatggtttcgaa
gcacaagtgggaccaatgaaggtttttgttactaaacatttgatgccacaagacttggta
tttaatgctggttctaatcctccttcttaccaaagtgcggaggatgtcattacaattaaa
agtagagtcagagtaaaaatagaaggttgtattagtcaagttagttctattcatgccatt
ggtagtataaaggaagattacttgggtgctatatga

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