Tetrapisispora phaffii: TPHA_0J02900
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Entry
TPHA_0J02900 CDS
T02235
Symbol
TPHA0J02900
Name
(RefSeq) hypothetical protein
KO
K03015
DNA-directed RNA polymerase II subunit RPB7
Organism
tpf
Tetrapisispora phaffii
Pathway
tpf03020
RNA polymerase
tpf03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
tpf00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
TPHA_0J02900 (TPHA0J02900)
09124 Replication and repair
03420 Nucleotide excision repair
TPHA_0J02900 (TPHA0J02900)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
tpf03021
]
TPHA_0J02900 (TPHA0J02900)
03019 Messenger RNA biogenesis [BR:
tpf03019
]
TPHA_0J02900 (TPHA0J02900)
03400 DNA repair and recombination proteins [BR:
tpf03400
]
TPHA_0J02900 (TPHA0J02900)
Transcription machinery [BR:
tpf03021
]
Eukaryotic type
RNA polymerase II system
RNA polymerase II
Pol II specific subunits
TPHA_0J02900 (TPHA0J02900)
Messenger RNA biogenesis [BR:
tpf03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
TPHA_0J02900 (TPHA0J02900)
DNA repair and recombination proteins [BR:
tpf03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase II complex
TPHA_0J02900 (TPHA0J02900)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
S1
SHS2_Rpb7-N
RNA_pol_Rbc25
Motif
Other DBs
NCBI-GeneID:
11532940
NCBI-ProteinID:
XP_003687545
UniProt:
G8BY60
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All DBs
Position
10:complement(643004..643519)
Genome browser
AA seq
171 aa
AA seq
DB search
MFFIKDLSLNIILHPSFFGPRMKQYLKTKLLQEVEGSCTGKFGYILCVLDYDKIEIERGR
ILATDGSAEFTVKYRAVVFKPFKGEVVDGTVVSCSQHGFEAQVGPMKVFVTKHLMPQDLV
FNAGSNPPSYQSAEDVITIKSRVRVKIEGCISQVSSIHAIGSIKEDYLGAI
NT seq
516 nt
NT seq
+upstream
nt +downstream
nt
atgttttttataaaagatctatcattgaatattattttgcatccatccttttttggccct
cgtatgaaacaatacttaaaaactaaattattacaagaagtagaaggttcatgtacaggt
aagtttggttatatattatgtgtcctagactatgacaaaattgaaattgaacgtggtaga
attttagcaactgatggttctgcagaatttacagtaaaatacagagcagttgttttcaag
ccatttaaaggtgaagttgttgacggtaccgttgtgtcatgctctcaacatggtttcgaa
gcacaagtgggaccaatgaaggtttttgttactaaacatttgatgccacaagacttggta
tttaatgctggttctaatcctccttcttaccaaagtgcggaggatgtcattacaattaaa
agtagagtcagagtaaaaatagaaggttgtattagtcaagttagttctattcatgccatt
ggtagtataaaggaagattacttgggtgctatatga
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