Tetrapisispora phaffii: TPHA_0J02910
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Entry
TPHA_0J02910 CDS
T02235
Symbol
TPHA0J02910
Name
(RefSeq) hypothetical protein
KO
K03010
DNA-directed RNA polymerase II subunit RPB2 [EC:
2.7.7.6
]
Organism
tpf
Tetrapisispora phaffii
Pathway
tpf03020
RNA polymerase
tpf03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
tpf00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
TPHA_0J02910 (TPHA0J02910)
09124 Replication and repair
03420 Nucleotide excision repair
TPHA_0J02910 (TPHA0J02910)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
tpf03021
]
TPHA_0J02910 (TPHA0J02910)
03400 DNA repair and recombination proteins [BR:
tpf03400
]
TPHA_0J02910 (TPHA0J02910)
Enzymes [BR:
tpf01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
TPHA_0J02910 (TPHA0J02910)
Transcription machinery [BR:
tpf03021
]
Eukaryotic type
RNA polymerase II system
RNA polymerase II
Core subunits
TPHA_0J02910 (TPHA0J02910)
DNA repair and recombination proteins [BR:
tpf03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase II complex
TPHA_0J02910 (TPHA0J02910)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_1
RNA_pol_Rpb2_2
RNA_pol_Rpb2_7
RNA_pol_Rpb2_4
RNA_pol_Rpb2_3
RNA_pol_Rpb2_5
Motif
Other DBs
NCBI-GeneID:
11533056
NCBI-ProteinID:
XP_003687546
UniProt:
G8BY61
LinkDB
All DBs
Position
10:complement(644358..648032)
Genome browser
AA seq
1224 aa
AA seq
DB search
MSQGEEYYADEDPYGFEDENAPISAEDSWTVISSFFREKGLVSQQLDSFNQFVDYTLQDI
ISEDSTLILEQLAQHTTESDNISRKYEISFGKIYVTKPMVNESDGVTHALYPQEARLRNL
TYSSGLFVDVNKRTYEATDVPGRELKYNLIAEESEEDSENDKVFIGRLPVMLRSKNCYLS
DATESDLYKLKECPFDMGGYFIINGSEKVLIAQERSAGNIVQVFKKAAPSPISHVAEIRS
ALEKGSRFISTLQVKLYGRESSSTRTIKATLPYIKQDIPIVIIFRALGIIPDGEILEHIC
YDVNDWQMLEMLKPCVEDGFVIQDRETALDFIGRRGTALGIKKEKRIQYARDILQKEFLP
HITQLEGFESRKAFFLGYMINRLLLCALDRKDQDDRDHFGKKRLDLAGPLLGQLFKTLFR
KLTKDIFRYMQRTVEEANDFNMKLAINAKTITSGLKYALATGNWGEQKKAMTSRAGVSQV
LNRYTYSSTLSHLRRTNTPIGRDGKLAKPRQLHNTHWGLVCPAETPEGQACGLVKNLSLM
SCISVGTDPMPIITFLSEWGMEPLEDYVPHQSPDATRVFVNGVWHGVHRNPARLMETLRT
LRRKGDINPEVSMIRDIREQELKIFTDAGRVYRPLFIVDDDDDLGHKELRVRKGHVARLM
ATEYQDIEGGFEDVEEYTWTSLLNEGLVEYIDAEEEESILIAMQPEDLDPVSDEPEAIPD
VETDTAKRIRAVHHATTFTHCEIHPSMILGVAASIIPFPDHNQSPRNTYQSAMGKQAMGV
FLTNYNVRMDTMANILYYPQKPLGTTRAMEYLKFRELPAGQNAIVAIACYSGYNQEDSMI
MNQSSIDRGLFRSLFFRSYMDQEKKYGMSITETFEKPQRTNTLRMKHGSYDKLDDDGLIS
PGVRVSGEDIIIGKTTPISPDEEELGQRTAYHSKRDASTPLRSTENGIVDQVLVTTNQDG
LKFVKVRVRTTKVPQIGDKFASRHGQKGTIGITYGREDMPFTAEGIVPDLIINPHAIPSR
MTVAHLIECLLSKVAALSGNEGDASPFTDITVEGISKLLREHGYQSRGFEVMYNGHTGKK
LMAQIFFGPTYYQRLRHMVDDKIHARARGPMQVLTRQPVEGRSRDGGLRFGEMERDCMIA
HGAAAFLKERLMEASDAFRVHVCGICGLMTVIAKLNHNQFECKGCDNKIDIYQIRIPYAA
KLLFQELMAMNITPRLYTDRSKNF
NT seq
3675 nt
NT seq
+upstream
nt +downstream
nt
atgtcacaaggtgaagaatattatgctgatgaagatccttatggttttgaagatgagaat
gctccaatctcagcagaagattcatggactgttatttcttcttttttccgtgaaaaaggt
ctagtatcacaacaattagactcattcaaccaatttgttgattatactctacaagatatt
atctcagaagattctactttaattttggaacaattggctcaacatactactgaatcagat
aacataagtagaaaatatgaaattagttttggtaaaatttatgtcacgaaaccaatggta
aatgaatctgatggtgttacccatgcattatatccccaagaagctcgtttacgtaattta
acttattcttctggtttattcgtcgatgttaataagagaacttatgaagccactgatgtc
ccaggtagagaattaaaatataatttaattgccgaagaaagtgaagaagacagtgaaaat
gataaagttttcattggtcgtttacctgttatgttaagatcaaagaattgttacttgagt
gacgctacagaatctgatttatataaattaaaagaatgtccattcgatatgggtggttat
ttcattattaatggttcagaaaaagttttaattgcacaagaacgttctgctggtaatata
gttcaagtcttcaaaaaagctgctccttccccaatttctcacgtagctgaaattagatct
gctttagaaaaaggttctagatttattagtacactacaagttaaattatatggtagagag
agtagttcaactagaactataaaagcaaccttaccttacattaaacaagatattccaatt
gtcatcatttttagagctttaggtatcattccagatggtgaaatcttagaacatatttgc
tatgatgttaatgattggcaaatgttagaaatgttaaaaccttgtgtggaagatggtttc
gttatccaagatcgtgaaacggctttagattttattggtcgtcgtggtaccgctttaggt
attaagaaggaaaagagaattcaatatgcaagagatattttacaaaaagaatttttacca
catattacacaattagaaggttttgaaagtagaaaagctttcttcttaggttatatgatt
aatagattattattatgtgcattagatcgtaaagatcaagatgatcgtgatcatttcggt
aagaaaagattagatttagcaggtccattattaggtcaattattcaaaaccttgtttaga
aaattaaccaaggacattttccgttatatgcaaagaacagtagaagaagctaatgatttc
aacatgaaattagccattaatgctaagacaatcacttctggtttgaagtatgctttagct
acaggtaattggggtgaacaaaagaaagcaatgacttcaagagctggtgtgtcccaagtt
ttaaaccgttatacttattcatcaacgttatcacatttaagaagaaccaacactcctata
ggtagagatggtaaattagcaaaaccccgtcaattacataatacacattggggtcttgtt
tgtcctgcagaaactccagaaggtcaagcttgtggtttggtcaaaaatttatcacttatg
tcctgtatttctgttggtactgatccaatgcctattattactttcttaagtgaatggggt
atggaaccgttagaagattatgttccacatcaatctcctgatgctactagagtttttgtt
aatggtgtttggcatggtgttcatagaaatccagctagattaatggagactttaagaaca
ttaagaagaaaaggtgatattaatccagaagtttcgatgattagagatattcgtgaacaa
gaattaaaaattttcacagacgcaggtagggtttatagacctctatttatagttgatgat
gatgatgatttaggtcataaagaattaagagttagaaagggacacgttgctagattaatg
gcaaccgaatatcaagatattgaaggtggttttgaagatgttgaagaatatacctggact
tctttgttaaacgaaggtttagttgaatatattgatgccgaggaagaagaatctatttta
attgctatgcaacctgaagatctagatcctgtcagcgatgaacctgaagccatacctgat
gtagaaactgacacagctaaacgtatcagagctgtacatcacgccaccactttcacacat
tgtgaaattcacccatctatgattttaggtgttgctgcttccattattcctttccctgat
cataaccaatctcctcgtaacacttatcaatctgcgatgggtaagcaagctatgggtgtt
ttcttaacgaattacaatgttcgtatggatacaatggcaaacattttatactacccacaa
aaaccattaggtacaactcgtgctatggaatatctaaagttcagagaattaccggctggt
caaaatgctattgtggctattgcatgttactctggttacaatcaagaagattctatgatt
atgaaccagtcttcaattgatcgtggtttgtttagatcattattttttagatcgtacatg
gatcaagaaaagaaatacggtatgtctatcaccgaaacttttgaaaaaccacaacgtacc
aatactttgagaatgaagcatggttcatatgataaactagatgacgatggtctaatctct
cctggtgtcagagtttctggtgaagatatcattattggtaagactactccaatctcccct
gatgaagaagaattaggtcaaagaacagcatatcattcgaagcgtgatgcttctacacca
ttgagaagcaccgaaaatggtattgttgatcaagtattagttaccaccaatcaagatggt
ctaaaatttgttaaagttcgtgttagaaccactaaagttccacaaatcggtgacaaattt
gcttctcgtcacggtcaaaaaggtacgattggtatcacatacggtagagaagatatgcct
tttaccgctgaaggtatcgttccggatttgatcatcaatcctcatgctattccatctcgt
atgactgtcgcgcatttaattgaatgtttattaagtaaggttgcagctttatctggtaat
gaaggtgacgcctctccatttacagacattactgtggaaggtatttctaaattattacgt
gaacatggttaccagtctcgtggtttcgaagttatgtataatggtcataccggtaaaaag
ctaatggcacaaattttctttggtccaacttattatcaacgtttaagacatatggtagac
gacaagattcacgccagagctcgtggtccaatgcaagtgttaactagacaaccagtagaa
ggtaggtccagagatggtggtttaagattcggtgaaatggaaagagactgtatgattgca
cacggtgcagcagctttcttaaaggaaagattaatggaagcttctgatgcgtttagagtt
catgtgtgtggtatttgtgggttgatgacagtcattgctaaattaaatcataaccaattc
gaatgtaaaggttgtgataacaaaattgatatttatcaaatccgtattccatatgctgct
aaattattattccaagaactgatggcaatgaatatcacaccacgtctatacaccgaccgt
tcaaagaacttttaa
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