Tetrapisispora phaffii: TPHA_0K01110
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Entry
TPHA_0K01110 CDS
T02235
Symbol
TPHA0K01110
Name
(RefSeq) hypothetical protein
KO
K14403
cleavage and polyadenylation specificity factor subunit 3 [EC:3.1.27.-]
Organism
tpf
Tetrapisispora phaffii
Pathway
tpf03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
tpf00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
TPHA_0K01110 (TPHA0K01110)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
tpf03021
]
TPHA_0K01110 (TPHA0K01110)
03019 Messenger RNA biogenesis [BR:
tpf03019
]
TPHA_0K01110 (TPHA0K01110)
Transcription machinery [BR:
tpf03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
TPHA_0K01110 (TPHA0K01110)
Messenger RNA biogenesis [BR:
tpf03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage and polyadenylation specificity factor (CPSF) complex
TPHA_0K01110 (TPHA0K01110)
U7-dependent histone pre-mRNA processing factors
TPHA_0K01110 (TPHA0K01110)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
CPSF73-100_C
Beta-Casp
Lactamase_B_6
Lactamase_B
Anti-Pycsar_Apyc1
RMMBL
Lactamase_B_2
Lactamase_B_3
Motif
Other DBs
NCBI-GeneID:
11533389
NCBI-ProteinID:
XP_003687679
UniProt:
G8BZB7
LinkDB
All DBs
Position
11:232547..234919
Genome browser
AA seq
790 aa
AA seq
DB search
MEQPNPTGLRFFSLGGGNEVGRSCHILQYKGKTIMLDAGVHPAYQGLASLPFYDEFDLST
VDILLISHFHLDHAASLPYVMQRTNFNGRVFMTHPTKAIYRWLLKDFVRVTSIGGSPNEK
DDNLYTDEDLSESFDRIETIDYHSTMDVNGIKFTAFHAGHVLGAAMFQIELGSLRVLFTG
DYSRELDRHLNSAEIPPLASDVLIVESTFGTATHEPRLSREKKLTQLIHSTVTKGGRVLM
PVFALGRAQELMLILDEYWSHNEEELGNGQVPIYYASNLAKRSMSVFQTYVNMMNDSIRK
KFRDSKTNPFIFKNISYLKNIDSFQDFGPSVMLAAPGMLQNGLSRDLLEKWCPEPKNMVL
ITGYSVEGSMAKYLMLEPENIPSVNNPEVNIPRRCQVEEISFAAHVDFQENIDFIEQIRA
SNIILVHGESNPMGRLKSALLSNFSSTKGTEDEVHVFNPRNCADVILEFKGVKVAKAVGT
IVEEIQKEEKEIKEEKEIREEDANIKSETSDVKLEKSDEKIIPKEGKQNDDNEGVIISGI
LVSNEKNFDLNLVSLEDLREHYSELSTTVLRERQSVQVNCRKELIYWHLCQMFGDISVLE
DEDEITNVVENGETEKKINDDMGRLVLEIMNDLKLTVVNHVATLEWIQGLISDSVADSII
AILMSVDSTPASVKRSSNSCNHNHTHGNTLQIEQTDDVWKIKQISKLFTRQFGDSFTLLL
GKNNSDNIKKEENTEVKQETDDIFGMVTIGKNTARINFSKMKIVECNSNPLKGRVESIMN
IGTDLVASLC
NT seq
2373 nt
NT seq
+upstream
nt +downstream
nt
atggaacaacctaatccaactggcttgaggttcttttccttaggtggtggtaatgaggtc
ggtagatcatgtcacatccttcaatataaaggtaaaactattatgttagatgcaggtgtt
catcctgcttaccaaggccttgcatccttacctttctatgatgaatttgatttatctaca
gttgatatactattgatttcacattttcatttagatcatgcagcatcgttaccttatgtc
atgcaaagaactaactttaatggtagagtgtttatgacacatccaactaaagctatttac
agatggttattaaaagatttcgtccgtgttacgagcattggtggttctcctaatgagaaa
gatgataatttatacacagatgaagatttgtctgaatcctttgatagaatagagactatt
gactatcattcaaccatggatgtcaatggtattaaatttacggcctttcatgcaggtcat
gttcttggtgctgccatgtttcaaatagaattgggaagtttgagagttctctttacaggt
gattattctcgtgaactggatcgtcatttgaattctgctgaaatcccgccattagcttct
gatgttttaatcgtggaatcgacttttggtactgccacacatgaacctcgtttgagtaga
gaaaagaaattaacacaactgattcatagtactgtaaccaagggaggccgtgttttaatg
ccagtttttgcattaggtagagcccaagaattaatgttaatcctagatgaatactggtct
cacaatgaagaagaattgggaaatggtcaagtgccgatctattatgcttctaacctagcc
aagcgttctatgagtgtcttccagacatatgttaatatgatgaatgattctattcgtaaa
aaattcagagattcaaaaacaaacccattcatttttaaaaatatttcatatttgaaaaat
attgattcctttcaggattttggtccttccgtgatgctagctgcaccaggtatgttacaa
aatggtttatctagagatttattggaaaaatggtgtcctgaacctaaaaatatggtatta
ataactggttattctgttgaaggtagcatggcgaaatatctgatgttagaacctgaaaat
attccatctgttaataatcccgaagtgaatatcccaagaagatgtcaagtagaggaaatc
tcatttgctgctcatgttgattttcaagaaaacattgactttattgagcagataagagcg
tcaaatattatattagttcatggtgaatccaatcctatgggtagattgaaatcagctttg
ttatctaacttttccagtacgaaaggtacagaagatgaagttcacgtatttaatccacga
aactgcgcagacgtgatccttgagttcaaaggtgtaaaagtggccaaagctgttggaaca
attgtggaagagatccaaaaagaagaaaaggaaataaaagaagaaaaagaaataagagaa
gaagatgcaaatatcaaatctgagaccagtgatgtgaaactagaaaaaagtgatgaaaaa
ataatacccaaagaaggaaaacaaaatgatgataacgaaggagttattatttctggtatt
ttagtatctaatgagaagaattttgatctaaatttagtatcacttgaagacctaagagag
cattattccgaattgtctacgactgttctgagagaaagacaatctgttcaagtaaactgt
agaaaagaattaatttattggcatttatgccagatgtttggtgatattagcgtgcttgaa
gatgaagatgaaataactaacgtagttgaaaacggtgaaacggagaaaaaaatcaatgat
gacatgggaagactagttcttgaaattatgaatgacttaaagttgactgtagttaaccat
gtcgctacattagaatggattcaaggtctcataagtgacagtgttgcagactctattata
gccattctgatgagtgtcgattcaactccagcaagtgtcaaaagaagtagtaatagttgt
aaccacaaccatactcatggaaatacactacaaatagaacaaactgatgatgtttggaaa
ataaagcaaatatcaaaacttttcactcggcagttcggtgattcttttactttacttcta
ggaaaaaataattctgataatatcaagaaagaagagaatactgaagttaaacaagaaact
gacgatatatttggaatggtcactatcggtaaaaatacagctcgtatcaatttttcaaaa
atgaaaatagtagaatgcaattccaatccattaaagggcagagtggaaagtataatgaat
attggtactgacctagtagcatcattgtgttga
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