Tetrapisispora phaffii: TPHA_0M00500
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Entry
TPHA_0M00500 CDS
T02235
Symbol
TPHA0M00500
Name
(RefSeq) hypothetical protein
KO
K14328
regulator of nonsense transcripts 3
Organism
tpf
Tetrapisispora phaffii
Pathway
tpf03013
Nucleocytoplasmic transport
tpf03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
tpf00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
TPHA_0M00500 (TPHA0M00500)
03015 mRNA surveillance pathway
TPHA_0M00500 (TPHA0M00500)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tpf03019
]
TPHA_0M00500 (TPHA0M00500)
Messenger RNA biogenesis [BR:
tpf03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
TPHA_0M00500 (TPHA0M00500)
mRNA cycle factors
P-body specific factors
TPHA_0M00500 (TPHA0M00500)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Smg4_UPF3
Motif
Other DBs
NCBI-GeneID:
11531918
NCBI-ProteinID:
XP_003688059
UniProt:
G8C0B0
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All DBs
Position
13:92065..93234
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AA seq
389 aa
AA seq
DB search
MAETTAKMELPTGEAAGKNQGDWNAKGKHKKGRRPENNASNATQGKSRSQRSRHRRKAKD
KEVSGFKLVLQSLPPALTETEFWDAVKSVVNDTNEYQINLNSFYFVQGKLSDKPFHDPVY
SRSYIMFKDMENLRKFALKIQDVTFTDANNDSSVASIKISPYNRSYNSALEKKKPAANKK
VLEGTIKDDPLFKAFVQSMKIMAESDQYMYSEINLFKPLKKELDKQKQVNEAILKQTEKA
LVELAGAVESEKKSKKKKKKKKKSEKKKEEETASKDSSSVAKTKSKPKGKPKLKSKSKLE
SKSKTNAKSKKVKEHDSLKKEKNNNVVILEAAGKKELQRRKRTLAKKENDLKNVQKNSFT
KLPSLMPNTPNPTPSSNPKMKILKRPNTE
NT seq
1170 nt
NT seq
+upstream
nt +downstream
nt
atggcagaaacaaccgctaaaatggaactgcccactggtgaagcagctggcaagaaccaa
ggtgattggaacgccaagggtaagcataagaagggcaggaggcccgagaacaatgctagc
aatgccacccaggggaagagcagatctcagagaagcagacatagacgtaaggctaaggat
aaagaagtttctggttttaaattggtcttgcaaagtttgccacctgcattgacagaaact
gaattttgggatgctgtcaagagtgttgtcaatgatacaaatgagtaccagatcaatttg
aattcattctattttgtgcaagggaagctgtcagataagccgttccatgacccagtttat
tcgaggtcttacataatgttcaaagacatggagaatctgaggaagtttgcgttgaaaatt
caggatgtaacgttcactgatgcaaataacgactctagtgtggcctcaataaaaatttca
ccttataatagaagttacaacagtgctttagagaagaagaaacctgctgcgaacaagaaa
gtattggagggcacaattaaagatgacccactgtttaaagcctttgtgcaatcgatgaag
ataatggcagagagtgatcagtatatgtattctgagatcaacctgttcaaaccattgaaa
aaagaattggataaacagaagcaagttaatgaagcaatcttgaaacaaactgaaaaggct
ctagtcgaactagcaggtgcagtggaatcagaaaagaagagcaagaagaaaaagaagaag
aagaagaagagtgaaaagaagaaagaagaagaaactgcaagcaaagattcctcgtctgtg
gctaaaactaaatcgaaacctaaaggaaaacctaaattgaaatccaagtcgaaattggaa
tcgaaaagcaaaacgaatgcaaaatccaagaaagttaaagagcatgattctttgaagaaa
gagaagaacaacaacgtcgttatattggaagctgcaggtaagaaagagttacaaaggaga
aaaagaacattagcaaagaaggaaaatgatttgaagaacgttcaaaaaaatagtttcaca
aaacttccatcactgatgcctaatactccaaaccctacaccgtcttcgaatcccaaaatg
aagatacttaagagaccaaatacagaatga
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