Tetrapisispora phaffii: TPHA_0M00900
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Entry
TPHA_0M00900 CDS
T02235
Symbol
TPHA0M00900
Name
(RefSeq) hypothetical protein
KO
K13025
ATP-dependent RNA helicase [EC:
5.6.2.7
]
Organism
tpf
Tetrapisispora phaffii
Pathway
tpf03013
Nucleocytoplasmic transport
tpf03015
mRNA surveillance pathway
tpf03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
tpf00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
TPHA_0M00900 (TPHA0M00900)
09122 Translation
03013 Nucleocytoplasmic transport
TPHA_0M00900 (TPHA0M00900)
03015 mRNA surveillance pathway
TPHA_0M00900 (TPHA0M00900)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tpf03019
]
TPHA_0M00900 (TPHA0M00900)
03041 Spliceosome [BR:
tpf03041
]
TPHA_0M00900 (TPHA0M00900)
03009 Ribosome biogenesis [BR:
tpf03009
]
TPHA_0M00900 (TPHA0M00900)
03012 Translation factors [BR:
tpf03012
]
TPHA_0M00900 (TPHA0M00900)
Enzymes [BR:
tpf01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
TPHA_0M00900 (TPHA0M00900)
Messenger RNA biogenesis [BR:
tpf03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
TPHA_0M00900 (TPHA0M00900)
mRNA cycle factors
Stress granule specific factors
TPHA_0M00900 (TPHA0M00900)
Spliceosome [BR:
tpf03041
]
Complex C
Other components
EJC/TREX
TPHA_0M00900 (TPHA0M00900)
Ribosome biogenesis [BR:
tpf03009
]
Eukaryotic type
90S particles
Helicases
TPHA_0M00900 (TPHA0M00900)
Translation factors [BR:
tpf03012
]
Eukaryotic type
Initiation factors
eIF-4
TPHA_0M00900 (TPHA0M00900)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
Helicase_C_2
AAA_22
CMS1
AAA_30
UvrD-helicase
CK1gamma_C
CobA_CobO_BtuR
Flavi_DEAD
DUF6718
Motif
Other DBs
NCBI-GeneID:
11531846
NCBI-ProteinID:
XP_003688099
UniProt:
G8C0F0
LinkDB
All DBs
Position
13:175733..176935
Genome browser
AA seq
400 aa
AA seq
DB search
MSAFRREDDQKLKFKTSKKLKVTATFEAMDLKDDLLKGVYLYGFEAPSAIQSRAITQIIS
GTDVIAQAQSGTGKTATFTIGMLQVIDLKRKDLQALILSPTRELATQINQVVTNLGDYMN
VQSYAMTGGKTMKDDLKKMNKSGCQVVSGTPGRVLDMIKRQLISTRNVQMLILDEADELL
GEHLGFKQQIYEIFAKLPSACQVVVVSATMSKDIIEVTKKFMSDPTKILVKRDEISLEGI
KQFYVNVSKEDWKFDTLCDLYDSLTITQCVIFCNTKKKVDWLSQKLTRSNFSVIAMHGDM
KQEDRDKVMNDFRTGTSRVLISTDVWARGIDVQQVSLVINYDLPENMENYIHRIGRSGRF
GRKGVSINFVTDEDSSKQKEIERHYKIKIKPVPADLSTLA
NT seq
1203 nt
NT seq
+upstream
nt +downstream
nt
atgtctgcatttagaagagaagatgatcagaagctgaaatttaaaacctctaaaaaactg
aaggtcactgccacttttgaagccatggacttgaaagatgatttattgaaaggtgtttat
ctgtatgggtttgaggctccttcagctattcagtcccgtgcaattactcagattatttca
ggtacagatgtcattgctcaggcccaatctggtaccggtaagaccgctactttcacaatt
ggtatgttacaggtcattgacttaaaacgtaaagatttgcaagcattaattttatcgcca
acgagagagttggctacgcaaattaatcaagtcgtaactaacttaggagattacatgaat
gtacaatcatacgcaatgactggtggtaaaactatgaaagatgatttaaaaaagatgaat
aagagtggttgccaggttgtgagtggaacaccaggtagagttctcgatatgattaaaaga
caattgataagcactagaaatgtgcaaatgttgattttagatgaagcagatgaattactg
ggagaacatttaggttttaaacaacaaatttatgagatatttgctaaactgccatctgca
tgtcaagttgttgttgtcagtgctactatgagtaaagatataatagaagtaaccaaaaaa
tttatgagtgatccaacaaaaattttagttaagagagatgaaatctctttagaaggtatc
aagcaattttatgtgaatgtcagtaaagaagactggaaatttgatacattatgtgattta
tatgattcattaactattacacaatgtgtcattttttgtaatactaaaaagaaagtcgat
tggttatctcaaaaattaactagatcgaacttttcagttatagcaatgcatggtgatatg
aaacaggaagatagagacaaagtcatgaatgattttagaacaggtacctccagagttctg
atatcaacagatgtatgggctagaggtattgatgtgcaacaagtgtcactagtgataaat
tatgatttacctgaaaatatggaaaactatattcaccgtattggtagaagtgggagattt
ggtagaaagggtgtctctattaattttgtaactgacgaagactcctctaaacaaaaagaa
atagaaagacactataaaataaagataaaaccagtaccagctgatttatcaactctagca
taa
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