Tetrapisispora phaffii: TPHA_0M01770
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Entry
TPHA_0M01770 CDS
T02235
Symbol
TPHA0M01770
Name
(RefSeq) hypothetical protein
KO
K14404
cleavage and polyadenylation specificity factor subunit 4
Organism
tpf
Tetrapisispora phaffii
Pathway
tpf03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
tpf00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
TPHA_0M01770 (TPHA0M01770)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
tpf03021
]
TPHA_0M01770 (TPHA0M01770)
03019 Messenger RNA biogenesis [BR:
tpf03019
]
TPHA_0M01770 (TPHA0M01770)
Transcription machinery [BR:
tpf03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
TPHA_0M01770 (TPHA0M01770)
Messenger RNA biogenesis [BR:
tpf03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage and polyadenylation specificity factor (CPSF) complex
TPHA_0M01770 (TPHA0M01770)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
zf-CCCH
zf_CCCH_4
Torus
zf-CCCH_2
zf-CCCH_3
zf-CCCH_RBM22
DUF4905
Nab2p_Zf1
zf-CCCH_PARP12
Motif
Other DBs
NCBI-GeneID:
11531897
NCBI-ProteinID:
XP_003688186
UniProt:
G8C0N7
LinkDB
All DBs
Position
13:complement(366308..366940)
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AA seq
210 aa
AA seq
DB search
MSVVHPETNKYNFKFEPFLRQEYSLSLDPDRPICEYYNGISSDSCPLGNNCPKKHVLPIF
HNKIVCKHWLRGLCKKNDNCEYLHEYNLRKMPECVFFSKNGFCTQTPECQYLHIDPLNKI
PKCEDYELGYCAQGPNCNKRHISKTLCQRYLTGFCPLGKGCDSAHPVFNIWNMNDDSIRI
KKDEEINTRQSDAEKERRLNAIINGEIDFD
NT seq
633 nt
NT seq
+upstream
nt +downstream
nt
atgagcgtggtacatccagaaacaaataaatataattttaaatttgagccgtttttaaga
caggaatatagtttatctttggacccagacaggccaatttgtgaatattacaatggcatc
tcgtcagattcatgtcctttggggaataactgtcccaagaagcatgtgttaccaattttc
cacaataaaattgtctgtaaacattggttaagagggttatgcaaaaaaaatgataattgt
gaatacttgcacgaatataatttgagaaagatgcctgaatgtgtattcttcagtaaaaat
ggattctgtactcaaactcctgagtgtcaatacctgcacatagatccactaaacaaaatc
ccgaaatgtgaagactacgaactaggttattgtgcccaaggccctaattgtaataaaaga
cacatctcaaagacgttgtgccaaagatatttgacagggttttgtcccttagggaaaggt
tgcgattcagcgcatcctgtttttaacatatggaatatgaacgatgattctataagaatc
aagaaagacgaagaaatcaatacaagacaatcagatgccgaaaaggaaagaaggttgaat
gcaattataaatggtgaaatagactttgactga
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