Tetrapisispora phaffii: TPHA_0M01900
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Entry
TPHA_0M01900 CDS
T02235
Symbol
TPHA0M01900
Name
(RefSeq) hypothetical protein
KO
K12617
DNA topoisomerase 2-associated protein PAT1
Organism
tpf
Tetrapisispora phaffii
Pathway
tpf03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
tpf00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
TPHA_0M01900 (TPHA0M01900)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tpf03019
]
TPHA_0M01900 (TPHA0M01900)
Messenger RNA biogenesis [BR:
tpf03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
TPHA_0M01900 (TPHA0M01900)
mRNA degradation factors
5'-3' decay
Decapping complex
TPHA_0M01900 (TPHA0M01900)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
PAT1
Motif
Other DBs
NCBI-GeneID:
11531830
NCBI-ProteinID:
XP_003688199
UniProt:
G8C0Q0
LinkDB
All DBs
Position
13:complement(394557..397247)
Genome browser
AA seq
896 aa
AA seq
DB search
MSFFGFNSKLPNEGNRQRHDHGKKDNNNSPLDFEDTYKGYGEYEREEDDYLNDETFGDDV
AFGTDFDFGHGSSSANSGMISTNQSQGQQGFNDPVGMQGAQAQQQQFQMHSSYAAAASTT
VPQQQAQMNVTMDMRPMESLWSNQPDMSTQVGQNEVLSMEELERQQIQMQQQQQHPPPQM
FMPNYPNQQPQQPQQQFQNNYQNNFQNNFQNPQNMNNQFQQPPPPQIFNQPPPPNQQQTQ
AQMNQAPVHMDSPGQFNPQHMHAMHAVPGGMPMPMQMNNQISNHLHHQQFDPSLELKNQN
QHRQQQVMGQNIGQNELLENDQALSTPSPKPTHQVLQREDGSIASNGNNNQSYIHIKDKG
PRRMSRRSEPLSSEEQKRLQIRHAKVEKILKNAGLMTPRDKDFITRYQLSQIVTEDPYNE
DFYFQVYKIIQTGGVAGKSNKDLIARAYLEHSGHRLGGRYKRADVALQRMQNQVEKAVTV
AKERPQKNKDNTDSAREGVLGKISSSLNSKAPRRQLQIPSPKLSDEEDESKLSSHASSES
LEEVTESLNNVGINQSSRSRRRSSYAFSSVDQISVLSRSGGRKFVLSLIETVYEEVLELE
AQLRSGNETDSTGLWESLHIGDEAYDVSPFISMLSFDKGVKIMPRIFNFLDKASKLKLLQ
TFFNELSHLNVIIISSFKTNPTPTEAQLKKIELFQGVFLKIIVSFLSSSADFIEIMGLLL
HLIRNNNVSFISTSTLGLNLITILISRAAIIKQDCNRTNSLSSPDIQAWNEIYDKLFISL
ETKLSLVFPPQEYRDTVVKETSQSGQLQQSNTQYFDQSYIWQFLASLALSGKLNHQRIII
DEVRDEIFGTINCAEQMKSLPDQSSAYRRDKLYQDLNLFLNVMGLVARDGEISELK
NT seq
2691 nt
NT seq
+upstream
nt +downstream
nt
atgtcgttttttgggttcaattctaaattgcccaacgaaggcaaccgtcagcgtcatgat
cacggtaagaaagacaacaacaattctcctttggattttgaggatacttacaaaggatat
ggcgaatacgaaagagaagaagatgactatttgaacgacgaaacttttggtgacgatgta
gcttttggtacagattttgatttcggtcatggaagttcaagcgctaactccggaatgatt
agtaccaatcagtctcaaggtcaacaaggcttcaacgatccagttggtatgcaaggcgct
caggctcagcaacaacaatttcagatgcatagctcttatgctgctgcagcttccaccact
gttcctcaacagcaggcccaaatgaatgtcaccatggatatgagaccaatggaatcgtta
tggtctaaccaaccggatatgtcgactcaagtaggtcaaaatgaagttttatctatggaa
gaattagaaagacagcaaatccaaatgcaacagcaacaacaacacccaccaccgcaaatg
tttatgccaaattatccaaaccaacagcctcaacaacctcaacaacaattccaaaataat
taccaaaacaatttccaaaataatttccaaaatcctcaaaacatgaataatcagtttcaa
cagccacctcctcctcagatctttaatcaaccacctcctccaaaccaacaacagacacag
gctcaaatgaatcaagcaccagttcatatggattccccaggacaattcaatcctcaacac
atgcacgcaatgcatgccgttccaggtggaatgccgatgccaatgcagatgaacaatcaa
atatctaaccaccttcatcaccaacaatttgatccttctttagaacttaaaaatcaaaac
caacatcgtcaacagcaagtaatgggtcaaaatattggacaaaatgaattgttagaaaac
gatcaagctttatctactccttctccaaagccaacccaccaagtattgcaaagagaagat
ggtagcatagcttccaatggcaataataatcaatcttatattcacattaaagataaaggt
cctcgtcgcatgtctagaagaagtgaacctttaagctcagaagagcaaaagaggttacaa
ataagacatgctaaagttgaaaaaatcttgaaaaatgcaggtttaatgactcctcgtgat
aaggactttatcacacgttatcaattgtcacagattgttaccgaagatccttacaatgaa
gacttttacttccaagtctataagattattcaaactggcggtgttgctggcaaatccaat
aaagatttgatcgctcgtgcctatttggaacattctggtcatagattaggtggtcgttat
aagagagctgatgtcgcattgcaaagaatgcaaaaccaagtagagaaagctgtcactgtt
gcaaaggaaagacctcaaaagaacaaggacaacactgactcggctcgtgaaggtgtctta
ggtaaaatctcatcgtctctaaacagcaaagctccacgtagacaattacaaattccatct
ccaaaactaagtgatgaagaagatgaatcgaagttgtcatcccacgcttcctcggagtca
ttagaagaagtcacagaatctttaaacaatgttggtatcaatcaatcatctagatcaaga
agaagatcgtcttatgcgttttcttcagttgatcaaatttctgttttatctcgttccggt
ggtagaaaatttgttttatctttgattgaaactgtttacgaagaagttctagaattagaa
gctcaattaagaagcggaaatgaaactgatagcaccggtttgtgggaatcattacatatt
ggtgacgaagcgtatgatgtttctccatttatttctatgttatctttcgacaaaggtgtg
aagataatgccacgtatttttaactttttggataaagcttcgaaactaaaattattacaa
acatttttcaacgaattatctcatttgaatgttattattattagttctttcaagaccaac
ccaactcctactgaggctcaattgaaaaaaattgaattattccaaggtgttttcctaaag
attattgtatcatttttatccagcagtgctgatttcattgaaatcatgggtctattatta
catctaatcagaaacaataatgtttcatttatctccacctctactcttggtttgaattta
attactattttgatttctcgtgctgctatcatcaagcaagactgcaacagaaccaacagt
ttatcttctccagatattcaagcatggaatgaaatttatgataaactatttatttcacta
gagactaaattatcattagtattcccaccacaagaatatagagatacagtggtgaaggaa
acttctcaatcaggacaattacagcagtccaacactcagtatttcgatcaatcatatatt
tggcaattcttagcatcattagcattgagtggtaaactaaatcatcaaagaattatcatc
gacgaagtaagagatgaaatattcggaaccattaattgtgcagaacaaatgaagagttta
cctgatcaaagctccgcttacagaagagataagttatatcaagatttgaacttattctta
aatgtaatgggtttggttgcaagagatggcgaaatttcagaattaaaataa
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