Tetrapisispora phaffii: TPHA_0O01420
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Entry
TPHA_0O01420 CDS
T02235
Symbol
TPHA0O01420
Name
(RefSeq) hypothetical protein
KO
K12598
ATP-dependent RNA helicase DOB1 [EC:
5.6.2.6
]
Organism
tpf
Tetrapisispora phaffii
Pathway
tpf03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
tpf00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
TPHA_0O01420 (TPHA0O01420)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tpf03019
]
TPHA_0O01420 (TPHA0O01420)
03041 Spliceosome [BR:
tpf03041
]
TPHA_0O01420 (TPHA0O01420)
03009 Ribosome biogenesis [BR:
tpf03009
]
TPHA_0O01420 (TPHA0O01420)
03016 Transfer RNA biogenesis [BR:
tpf03016
]
TPHA_0O01420 (TPHA0O01420)
Enzymes [BR:
tpf01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
TPHA_0O01420 (TPHA0O01420)
Messenger RNA biogenesis [BR:
tpf03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
TRAMP complex
TPHA_0O01420 (TPHA0O01420)
Spliceosome [BR:
tpf03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
TPHA_0O01420 (TPHA0O01420)
Complex C
U4/U6.U5 tri-SnRNP related factors
TPHA_0O01420 (TPHA0O01420)
Ribosome biogenesis [BR:
tpf03009
]
Eukaryotic type
Pre-60S particles
Helicases
TPHA_0O01420 (TPHA0O01420)
Transfer RNA biogenesis [BR:
tpf03016
]
Eukaryotic type
tRNA degradation factors
TRAMP complex
TPHA_0O01420 (TPHA0O01420)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
MTR4_beta-barrel
DSHCT
DEAD
MTR4-like_stalk
DEXQc_Suv3
Helicase_C
Connectase_N
Death_3
nSTAND3
YodE
Helicase_dom4_arc
Motif
Other DBs
NCBI-GeneID:
11530588
NCBI-ProteinID:
XP_003688543
UniProt:
G8C1T1
LinkDB
All DBs
Position
15:complement(281318..284545)
Genome browser
AA seq
1075 aa
AA seq
DB search
MSNLFDVFDEDGNDIADIQIEELEEVDNNAVEDVETATQKRGLDSEEESEGSKDDDEDNS
GKKLKHGDKLINEKKNTVVIPVVTDTFEQEESREVDVSTGLTNAATTQVEDDGKVKLKHQ
VRHQVALPPNYDYKPIGQHKRVNQARTYPFTLDPFQDTAISCIDRGESVLVSAHTSAGKT
VVAEYAIAQSLRDKQRVIYTSPIKALSNQKYRELSAEFGDVGLMTGDITINPDAGCLVMT
TEILRSMLYRGSEVMREVAWVVFDEVHYMRDKERGVVWEETIILLPDKVRYVFLSATIPN
SMEFAEWICKIHSQPCHIVYTDFRPTPLQHYLFPAHGDGIYLVVDEKSTFREENFQKAMA
SISNGAGDDPNSAVAKGKKGQSFKGGASKGDAKGDIYKIVKMIWKKKYNPVIVFSFSKRD
CEELALKMSKLDFNSEDEKDALSKIFNNAIALLPENDRELPQIKHILPLLRRGIGIHHSG
LLPILKEVIEILFQEGFLKVLFATETFSIGLNMPAKTVVFTSVRKWDGKQFRWVSGGEYI
QMSGRAGRRGLDDRGIVIMMIDEKMEPQVAKGMVKGQADRLDSAFHLGYNMILNLMRVEG
ISPEFMLEHSFYQFQNVISVPIMEKTYLELEKKADEIYIEDEENIREYYDIRKTLDGYNE
DLRHVITHPANLLSFLQPGRLINVNIGGEQDYGWAVVIDFVKRVNKRDTSVVYSDHESYI
VNVVVNTMYSNAPVNIIKPFNPVLPEGIRPIVKGEQPICAIIPITLESIKSVGNLRLFMP
KDIKASGQKETVAKSLNEVKRRFPDGVPLIDPVKNMKIEDEDFKTLLKKIVVLEEKLYSN
PLANSVRLSELYDKFSIKFALHEDMKKLKKKINESQAVIQLDDLRRRKRVLRRLGFSTPS
DIIELKGRVACEISSGDELLLTELIFNGNFNELKPEQAAALLSCFAFQERCKEAPRLKPE
LAEPLKAMREVASKIAKVMKDSKIEVIEKEYVESFRHELMEVVYEWCKGATFTQICKMTD
VYEGSLIRMFKRLEELVNELVNVARTIGNSALEEKMETIVKLIHRDIVSAGSLYL
NT seq
3228 nt
NT seq
+upstream
nt +downstream
nt
atgagcaatctatttgatgtttttgatgaagatgggaatgatatcgctgatattcaaatt
gaagaattagaagaagttgataacaatgcagttgaggacgttgaaactgcaactcaaaag
cgtggtttggattcggaagaagaatcggaggggtctaaagacgatgacgaagataattct
ggtaagaaactcaaacatggcgataaattaattaatgaaaaaaaaaatacggtcgttata
cctgttgtcaccgatacttttgagcaagaagaatcaagagaggttgatgtctctactggg
ttaactaatgctgctacaacgcaagtggaagatgatggtaaagttaaattgaagcatcaa
gttcgtcatcaagtcgctctacctccaaattatgattataaaccaatcggtcaacataag
agagtgaatcaggctcgtacttatccgtttactttagatcctttccaagatactgctatt
tcttgtattgatagaggtgaatcagttttagtctctgctcatacatctgctggtaaaact
gttgttgctgagtatgctattgctcaatctcttagggataaacaaagagtcatttatacc
tctccaattaaagcactatcaaatcaaaaatacagagagttatctgccgagtttggcgat
gttggtttaatgactggcgatattacaattaatccagatgctggatgtctagttatgaca
actgaaattctaagaagtatgttatatagaggtagtgaagttatgcgagaagttgcatgg
gttgtcttcgatgaagttcattatatgagagataaagagcgtggtgttgtttgggaagaa
accattattcttttaccagataaggttcgttatgtcttcttatctgccacaatcccaaat
tccatggaattcgctgaatggatttgtaaaatccactcccagccatgtcatattgtttac
acagatttccgtccaacaccgttacagcattatttgttcccagcacatggtgatggtata
tatttggtagtagatgaaaaaagtacgtttagagaagaaaactttcaaaaagctatggca
tcaatcagcaatggcgcaggtgatgatccaaattcagctgttgctaaaggtaagaagggc
cagtcattcaaaggtggtgcatcaaaaggtgatgccaaaggtgatatatataagattgtt
aaaatgatctggaagaaaaaatataacccagttattgttttctcctttagtaagcgtgat
tgtgaagaattagctttgaaaatgtctaaattagattttaattcagaagatgaaaaagat
gcattatctaaaattttcaataatgcaattgcattattacctgaaaatgacagagaatta
cctcaaattaaacacattcttccattgttgagaagaggtatcggtattcatcattctggt
ttgcttcctatcttaaaagaagttattgaaattctatttcaggaaggtttcctaaaggtg
ttatttgcaactgaaacattttcaattggtctaaatatgcctgccaaaactgttgttttc
acttcagtgaggaaatgggatggtaagcaattccgttgggtttctggtggtgaatatatt
caaatgtcaggacgtgctggtcgtcgtggtttagatgatcgtggtattgttattatgatg
atcgatgaaaaaatggaacctcaggttgctaaagggatggttaaaggtcaagcggataga
ttggactccgcattccatttaggttacaatatgattttgaacctaatgagagtagaaggt
atctctcctgagtttatgttggagcattccttttatcaattccaaaatgttatctctgtt
ccaatcatggaaaagacatatttggagctagaaaaaaaagctgatgaaatatacattgaa
gacgaagaaaatataagggaatactatgatatcagaaaaacgttggatggctataacgaa
gatttacgtcacgttatcacacatccagctaacctattgagtttcttacaacctggtaga
ttaattaatgttaatattggtggtgaacaagattatggatgggctgttgttattgatttc
gttaagagagttaacaaacgtgatacctctgttgtttattctgaccacgaatcttatatt
gtcaatgttgtcgtcaacacaatgtattctaatgctcctgttaatattattaaaccattt
aacccagtattaccagaaggtatccgtcctattgtgaaaggtgaacaacctatttgtgca
attattcctataacattagaatctattaaatctgttggtaacttaagattatttatgcca
aaggatattaaagccagtggccaaaaagaaacagttgcaaaatcattaaatgaagtcaag
agaagattcccagatggtgttccattaattgatcctgttaaaaatatgaagattgaagat
gaagatttcaagactctattgaaaaaaattgttgttctagaagaaaaattgtatagcaat
cctttagcaaattcggtgagattaagtgaattatatgacaaatttagcattaaatttgct
ttgcatgaagacatgaagaaattgaagaaaaaaatcaatgaatcacaagctgttatacaa
ttagatgatttacgtagaaggaagcgtgtattacgtagattaggtttctctactccaagt
gatatcatcgaattgaagggtagagtagcctgtgaaatatctagtggtgatgagttgtta
ttaaccgaattaattttcaatggtaatttcaatgaattaaaaccagaacaagctgccgcc
ttactgtcatgttttgccttccaagagcgttgtaaagaagctccaaggttaaaaccagaa
ttagctgaaccattgaaagcaatgagagaagttgcctccaaaattgctaaggttatgaag
gattccaaaattgaagttattgagaaggagtatgttgaaagttttagacacgaactgatg
gaagttgtctatgaatggtgtaaaggtgcaacattcactcaaatttgtaaaatgaccgat
gtatacgagggttccttaattagaatgtttaagagattagaagagctagttaacgaactt
gtcaatgtcgctcgtacaattggtaattctgcattagaagaaaaaatggaaactatagtc
aaactaatacatagagatattgtttcagctggttcattatatttatag
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