Tetrapisispora phaffii: TPHA_0P01750
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Entry
TPHA_0P01750 CDS
T02235
Symbol
TPHA0P01750
Name
(RefSeq) hypothetical protein
KO
K07573
exosome complex component CSL4
Organism
tpf
Tetrapisispora phaffii
Pathway
tpf03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
tpf00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
TPHA_0P01750 (TPHA0P01750)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tpf03019
]
TPHA_0P01750 (TPHA0P01750)
Messenger RNA biogenesis [BR:
tpf03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Core exosome factors
TPHA_0P01750 (TPHA0P01750)
Prokaryotic type
Archeal mRNA degradation factors
Exosome components
Core exosome
TPHA_0P01750 (TPHA0P01750)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
EXOSC1
CSL4_N
ECR1_N
Motif
Other DBs
NCBI-GeneID:
11530885
NCBI-ProteinID:
XP_003688766
UniProt:
G8C2F4
LinkDB
All DBs
Position
16:complement(362974..363828)
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AA seq
284 aa
AA seq
DB search
MSINFKFPESVIPGQLLCPAFDIKEENDKSIVYEYIAGPGTRLQKHNLNGTVVNIINSTL
VGTVKIEEDFKMDSSNLDELNETAEDEKNHSNNGTREIKKIKVSVVHKRNNTSSEVDNEL
TNNLPKEGDIVLAKVTRITLQNVSLEILAVENSPVPIDSGVGSNGHGVVAAGAGSGSASY
SVSQTSSDFGDPFRGTLRSQDVRATERDSVKIIECFKPGDIVRAQILSLGDGVNYYLTTA
KDDLGVVFAKSGNGAGNQMYALDWETMVVPSTGATEKRKCAKPF
NT seq
855 nt
NT seq
+upstream
nt +downstream
nt
atgagtattaacttcaaatttccagaatctgtaattccaggccaattactttgtcctgca
tttgacattaaagaagaaaatgataaaagtatagtttatgagtatatagcaggtccaggt
actcgactacagaaacacaatcttaatgggacggttgttaatattatcaattctactttg
gtcggtacagtaaaaatcgaagaagattttaaaatggattcttccaatttagatgagttg
aatgagactgctgaagatgaaaagaatcatagtaataatggcacaagagagattaaaaaa
ataaaagtctctgttgttcataaaagaaacaacacatcatccgaagttgacaacgaatta
acaaataatttaccaaaggaaggagatattgtattggcaaaggtcacaagaatcactttg
caaaacgtaagtctagagattttagcggttgaaaatagcccagttccaatagatagtgga
gtcggtagcaatggccacggagtagtagctgcaggtgctggttcaggttctgcatcatat
tctgtttctcaaacatcctccgattttggtgatccatttagaggtacattgagatcgcaa
gatgttagagccacggaaagagatagtgttaaaatcattgagtgttttaaacctggagac
attgtaagagcacagatattatcattgggtgatggtgtgaattattatctaacaactgct
aaagatgatttgggtgttgttttcgctaaaagtggtaatggagcaggaaatcaaatgtat
gctttggattgggaaactatggtagttccttcgacaggtgcaacggaaaaacgtaaatgt
gctaaaccgttttag
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