Treponema pallidum subsp. pallidum Chicago: TPChic_0105
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Entry
TPChic_0105 CDS
T01868
Name
(GenBank) DNA polymerase I (POL I)
Organism
tph
Treponema pallidum subsp. pallidum Chicago
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol_A
5_3_exonuc_N
DNA_pol_A_exo1
5_3_exonuc
DNA_polI_exo1
RNase_T
HHH_5
Motif
Other DBs
NCBI-ProteinID:
ADD72258
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Position
115766..118813
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AA seq
1015 aa
AA seq
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MLHITLSLRLTVVYSLHLMQEKKTLYLLDAYGLIYRSYHAFARAPLINDSGANVSAVYGF
FRSLHTLLCHYRPRYFVAVFDSLTPTFRHVQYPAYKAKRDKTSAELYAQIPLIEEILCAL
GITVLRHDGFEADDLIATLAKRVAAEHCHVVIISSDKDVLQLVCDTVQVLRLDIDHKWTC
CDAAYVQQRWTVMPTQLLDLFSLMGDSSDNVPGVRGIGPKTAAHLLHCFGTLDGIYRHTY
SLKEALRTKIVCGKKDAFFSRSLIELRDDVPCVFSLEDSCCIPLDVTSAARIFVREGLHA
LAQQYRACVQEIDTEATNDTLQMTESSVLTSGRCANECFLSQVEGRASTPEVNSVLKSEL
KTSAVSGAIPIENRDLRQDVMLARSAGHYRGVTDPVELKRIIDCACANGVVAFDCETDGL
HPHDTRLVGFSICFQEAEAFYVPLIVPDVSLHTESTQCTCARSTNVETEKECTEQHGVSA
SAVQDPAYVQAVMHQLRRLWNDETLTLVMHNGKFDYHVMHRAGVFEHCACNIFDTMVAAW
LLDPDRGTYGMDVLAASFFQIRTITFEEVVAKGQTFAHVPYECAVRYAAEDADITFRLYH
YLKLRLETAGLLSVFETIEMPLLPILARMEEVGIFLRKDVVQQLTRSFSDLIQQYEHDIF
SLAGHEFNIGSPKQLQTVLFQELHLPPGKKNTQGYSTDHSVLKKLARKHPIAEKILLFRD
LSKLRSTYTESLAKLADQTGRVHTSFVQIGTATGRLSSRNPNLQNIPIKSTEGRKIRQAF
QATVGHELISADYTQIELVVLAHLSQDRNLLNAFRQHIDIHALTAAYIFNVSIDDVQPAM
RRIAKTINFGIVYGMSAFRLSDELKISQKEAQSFIYRYFETYPGVYAFSTQVAEQTRKTG
YVTSLAGRRRYIRTIDSRNTLERARAERMALNTQIQSSAADIVKIAMIAIQRAFARRPLR
AQLLLQVHDELIFEAPAAETAIVKEILFAEMEHAVELSIPLRIHVESGNSWGDFH
NT seq
3048 nt
NT seq
+upstream
nt +downstream
nt
gtgctgcacataaccttatctttgcgattgaccgtggtatactccttgcaccttatgcaa
gagaaaaaaacgctttaccttcttgatgcctacggacttatttatcggagttaccacgcg
ttcgcgcgtgcgccgttgattaacgacagcggtgcgaatgtttctgccgtatatggtttt
tttcggagtttgcacacgctcctgtgtcactatcgaccccgttattttgttgctgttttt
gattctctcacgcctacctttcggcacgtacagtacccagcctataaggcaaaaagggat
aagacttctgcagagctttatgcgcaaattccccttatcgaagaaatcctgtgtgcactg
ggcattacagttttgcgtcatgacggctttgaagctgacgacctcattgcaaccctagca
aaacgagttgcggctgagcactgtcatgttgtgattatctcctcagataaagatgtactt
cagcttgtgtgtgatacggtgcaagtgctcagacttgacatagatcataagtggacatgt
tgcgacgctgcgtacgtacagcaacggtggacggtcatgccaacacaattacttgatttg
ttctctctcatgggagattcctccgacaatgtgcctggtgtgagagggattggtcctaag
acggctgcacatcttctccactgttttggcacacttgatggtatttatcgtcatacctat
tccttaaaagaagcgctgcgcacgaagatagtgtgtgggaagaaagatgcatttttttct
cgttcactcattgagttgcgtgacgatgtaccatgtgttttttcgctcgaagattcctgt
tgtattccgctcgatgtaacgtctgctgcacgtatttttgtgcgagaaggattgcatgcg
cttgcacaacaatatcgtgcttgtgtgcaagaaatagatacagaagcaacaaacgataca
ttacaaatgacagagtcttctgtgctcacgtctggtcgatgtgcaaatgagtgtttctta
tctcaggtagaagggagggctagtacaccggaggtgaactccgtattgaagtcggagttg
aagacgagtgctgtgtctggcgccatacctatagaaaatagagatcttaggcaggatgtt
atgcttgcacgcagtgcaggtcattatcgtggtgttactgaccctgtagaacttaaacgt
attattgattgcgcgtgtgcgaatggtgtggtcgcgtttgattgtgaaacggatggattg
catccgcacgatacacgtctggtcggattttcgatctgctttcaggaagcagaggctttt
tatgttcctcttattgttccggacgtttctcttcataccgagtcaactcagtgtacatgt
gcacgtagcactaatgtcgagactgaaaaggagtgcacagaacagcatggggtatctgca
tctgctgtgcaggatccggcatatgtccaagctgtcatgcaccagcttcgacgtctttgg
aatgatgagacgctcacacttgttatgcataatggaaagtttgattatcacgttatgcat
cgtgcaggcgtttttgagcactgtgcatgtaatattttcgatacgatggttgcagcttgg
ttgctggatcccgatcgcggtacatacggtatggatgtacttgccgcatcattctttcag
atcagaacgattacatttgaagaagtggtagcaaaagggcaaacctttgcgcacgtccct
tatgagtgtgcagtccgctatgcagcggaggatgcagatattacttttcgtttataccat
tatttaaaactccgcttggaaacagcaggattgctttctgtgtttgagaccatagaaatg
ccgcttttgcctatcctagcacgtatggaagaagtggggatttttttacgtaaggatgtt
gtgcagcagctcactcgatctttttcagatttgatccagcagtacgagcacgatattttt
tctcttgccggtcatgaatttaatattggttctccgaagcaactgcagacagtccttttt
caagaattacatttaccgcccggtaaaaagaatactcaaggttattctactgatcattct
gtattgaagaaacttgcacgtaagcatcccattgcagaaaaaatattgctctttagagat
ctttcaaagttacgttcgacgtataccgaatcgcttgcaaaacttgctgatcaaacaggg
cgtgtacatactagctttgtgcaaattggtaccgcaactggaaggctttcgagtagaaat
ccaaatttacaaaacattcccattaaaagcacagaaggaagaaaaataaggcaggcgttt
caagctactgttgggcatgagttaatttcggcagactatacacaaatagagctggtcgtg
ttggcccatctatctcaagatagaaatcttctcaatgcatttcgacagcacattgatatt
catgcattgactgctgcatatattttcaatgtgtctatagacgatgtacaacctgcaatg
agaagaatcgcaaaaactattaactttggaatcgtgtatggaatgagcgcttttagattg
agtgacgaacttaaaatttctcagaaggaagcgcagagcttcatttaccgttattttgaa
acgtacccgggggtgtatgcttttagtacacaggttgcagagcagacacgtaaaaccggc
tatgtgactagcttggctggaagacgacgctacatccgtactatcgatagtcgcaatacg
cttgagcgcgcgcgtgccgaacgtatggcgttgaatactcaaattcagagttctgcggcg
gatattgtgaaaattgccatgatagcaatccagcgtgcgtttgcgcgccgaccgttacgt
gcacaattgttgctgcaggtacacgatgaattgatttttgaggcgccagctgctgagaca
gcgatagtgaaagaaattctctttgctgagatggaacatgctgttgagctctcgatcccg
ctgcgtatacacgtggagtctggaaatagttggggtgattttcattag
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