Treponema pallidum subsp. pallidum Chicago: TPChic_0344
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Entry
TPChic_0344 CDS
T01868
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
tph
Treponema pallidum subsp. pallidum Chicago
Pathway
tph03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
tph00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
TPChic_0344 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
tph03400
]
TPChic_0344 (mfd)
Enzymes [BR:
tph01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
TPChic_0344 (mfd)
DNA repair and recombination proteins [BR:
tph03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
TPChic_0344 (mfd)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
TRCF
Helicase_C
CarD_TRCF_RID
UvrB_inter
ResIII
Cas3-like_C_2
RecG_dom3_C
IstB_IS21
Motif
Other DBs
NCBI-ProteinID:
ADD72469
LinkDB
All DBs
Position
complement(367683..371150)
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AA seq
1155 aa
AA seq
DB search
MSTRAQEMHARTQEPVRGILHSWNELQHALRSLRAARFPYRVEGCTGGLRSYFFGEYVRT
CCAHIVLVVPTEQDVAAVCTDLAHAAVPTRVLPWWGSLPYRPVSPNAHVFSHRVEALCAL
AQRDATAPCAFVFTQRALLTPVPPLDYVRTLKRSFRVGEHIEIHTLAAQLMQWGYARVDH
VSACAEFSLRGEILDIAAAAQAADNTQAYRIVCDFNTIERIHILAVSTCAVLQEVSACTL
YAAKEILWSEERIAFLHQNLQKLSECPAHCVPCIEELTHRKTYEGEEMFYPLCFERPTCV
LEYFRHSPSPPSVFYLDYERQHNGARALQDECRNLYHKMQLAHEHVPARWYPQPEHIVLD
FSAVCALHLHTVYFTHFFPQLPACESICLASDPARSFFGNIPYFKEELLRLSKDGWHVFV
FAESEQQALRIRALVKGCDVTVLPCALSAGFSIPALKILIVQEGEIFGRRRKTPQSVQRA
RSTPIDTFVELNPGDYVVHAQYGIGLFKGIERIKTAQSERDYVNLLYAQEETILIPIEQA
HLVQRYIGNEGNKPHLDSLGSKSWETRKARVKKSVENIAQKLVELYSLRKTTRGHAFPKD
DEWQYAFEAAFPYEETDDQRICIEEVKQDMQEAVPMDRLVCGDVGYGKTEIAMRAAFKAV
MGGKQVVFLTPTTLLVEQHFRTICNRFKHFPVRIEKLSRFVPKSEQKDILAKLAHGDIDL
IVGTHRLIQKDVSFKDLGLMILDEEQRFGVQDKEKLKQMKTNVDCLSLSATPIPRTLHMG
MLKIRDMSLLTTPPEGRLPIETVIQQFDPNLVATAIRKELDREGQIFYLHNRIENLESVK
CMLQKLVPELSICVAHSLMGSEELEDIFERFYQKTFQLLLSTTIIENGIDVPNANTIIID
RADMYGVSQLYQLRGRVGRSDKKAYAYLLYYHDVALSDLAIKRLQVISDFTDLGAGFKVA
LKDMEIRGVGNLLGKEQSGDIYSVGFDLYVQLLEEAIERLQHAPNEQRIETVIDLNYRGF
IPHTYIAADEIKMELYKKIAAAHTHEELERIRTETITRFGPIPEEAAGLFTVAEIKVRCE
KLAILSLKETHESLLIEFDKVCDTAFKKILRLVQTSNDRVRLDAKQPNMLILTSDAIEIK
EKGIFICEILKRLES
NT seq
3468 nt
NT seq
+upstream
nt +downstream
nt
gtgtcaacacgcgctcaagaaatgcacgctcgtacccaggagcctgtgcgtggcatactc
cattcttggaatgagctccagcatgcgctgcgctcgctgcgtgccgcacgctttccctac
cgcgttgaagggtgcaccggtggactgcggtcctacttttttggcgaatacgtgcgcacg
tgttgcgcacacatagtgctcgtagtccctaccgaacaggacgtcgccgccgtctgcacc
gaccttgcacatgcagcagttcctacgcgcgtgctgccctggtgggggtcgctgccctac
cgccctgtctcacctaacgcacacgtgttctctcaccgggtagaggcgctgtgcgcactc
gcacagcgcgatgcaaccgcgccatgcgcgttcgttttcacccagcgtgcactgctcacc
cccgttcctcccctcgattatgtgcgtaccctcaaacgctccttccgtgtgggagagcac
atcgagatccacacgctcgctgcccagcttatgcaatggggatatgcacgtgtcgaccac
gtcagcgcttgcgcagagttttctctccggggagaaattctcgatatcgctgccgcagcg
caggctgctgacaacacacaagcgtaccgaatcgtgtgtgattttaacaccatagaacgt
atccatatactggcggtgtccacgtgtgccgtcctgcaagaggtatctgcgtgcacactg
tacgctgcaaaagaaattctttggagtgaggagcgtatagcgttcctccaccaaaatctc
caaaaactgtccgaatgtcctgcccactgcgtcccgtgtatcgaagaactcacccacaga
aaaacgtatgaaggggaggaaatgttctatccactgtgctttgaacgtcccacctgcgtt
ctcgaatattttcgccacagcccttcacccccaagcgtcttttatcttgactacgaacgc
cagcacaacggtgcacgcgcgctccaagacgagtgtcggaacctctaccataaaatgcaa
ctcgcgcacgaacatgtacctgcgcgctggtatcctcaaccagaacacatagtgctcgat
ttttccgctgtctgcgcgctccacctgcacacggtgtatttcactcacttttttccacag
ctgccagcgtgcgaaagtatatgcttggcaagcgatcctgcacgcagcttcttcggtaac
attccttacttcaaagaagagctactccgtctttcaaaagacggatggcacgttttcgtc
tttgcagaaagtgagcagcaggcactgcgcatcagagcactagtcaaaggttgcgacgtc
actgtgctaccttgcgcgctttctgcaggatttagcattcctgctctcaaaatactgatc
gttcaagaaggcgaaatcttcggtcgccgcagaaaaactcctcaatcagtgcaacgcgca
cggagcacgcctatcgacacatttgtggaattaaatcccggggattacgtggtgcatgcg
cagtacggcatcggtttatttaagggaatagagcgcataaaaacagcacagtcagaacgt
gattacgtaaacctcctctatgcacaggaagaaacgatccttatccctattgagcaggca
catctggtgcaacgttacattggaaatgaagggaacaaacctcacttagatagccttggg
tcaaagtcatgggaaacgagaaaagcacgtgtcaaaaaatctgttgaaaacatcgcgcaa
aaactagtggaactctactctctgcgaaaaactacgcgcggccacgccttcccaaaagat
gacgaatggcagtatgcgtttgaagcagcattcccctacgaagaaacagacgatcagcgc
atatgcattgaagaagtcaaacaggatatgcaagaagccgtccccatggatcggctggtg
tgcggagatgtcggatacggaaaaacagagattgcaatgcgcgcggcatttaaggcggta
atgggaggaaaacaagtggtgttcctcacccctaccaccttactagtggaacaacacttt
cgcacaatctgcaatcggtttaaacactttcccgtcagaatcgagaagctctcacgcttt
gttcctaaatctgaacaaaaggacatactcgccaaactcgcgcatggagatatcgatctt
attgtgggtacccaccggcttatccaaaaggacgtgtccttcaaggatcttgggttgatg
atcctcgatgaggaacaacgtttcggtgtgcaggataaagaaaaattaaagcagatgaaa
actaatgtagattgtctctccctcagtgcaacgcccattccccgaacgcttcacatgggt
atgctcaaaatcagagacatgagcttgctcaccacccctcctgaaggccgcctacctata
gaaacggttatccagcagtttgatccaaaccttgttgccactgcaatcagaaaagagcta
gatcgtgaggggcagattttttacctacataacagaatcgaaaacttagaatccgtaaag
tgtatgctccaaaaactcgtgcctgagctatccatatgcgttgcccacagtctcatgggg
tcagaagaactggaagacatttttgaaaggttttatcaaaaaacgttccagctcctgctt
tctaccaccattattgaaaatggtatcgacgttcccaatgcaaatactatcatcatagat
agagctgatatgtacggggtttcccagctctaccaactcaggggacgcgttggtcggtct
gacaaaaaagcatatgcgtatctgctgtactatcacgacgtggcactttcagaccttgca
ataaaacgtttacaggtgatctctgactttactgaccttggggcgggtttcaaagtcgcc
ttaaaagatatggagattcgcggggtaggaaatctattaggcaaagaacaatcaggagat
atctattcagtcggattcgacctgtatgtacagctgttagaagaggcaatagaacgcctc
caacatgctccaaacgagcaaaggatagaaaccgtcatcgatcttaattaccgagggttc
atcccccatacgtacattgccgcagatgaaattaaaatggaactgtataaaaaaatcgct
gcagctcatacgcatgaggagcttgagcgcatacgcacggaaactatcacccggttcggt
cctatccctgaggaagcagctgggttgtttaccgtggcagaaatcaaagtgcggtgcgaa
aagctcgccattctctcactcaaagaaacacacgaaagcttattgattgagtttgacaag
gtctgcgacactgccttcaaaaagatactgcgcctggtacagacctccaacgatcgcgtt
cgccttgacgcaaagcagcccaacatgctgatcctcacatcagatgccattgaaataaaa
gagaaaggcatctttatttgtgaaatactcaagcgtcttgagtcataa
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