Treponema pallidum subsp. pallidum Chicago: TPChic_0493
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Entry
TPChic_0493 CDS
T01868
Name
(GenBank) RNA polymerase sigma factor RpoD
KO
K03086
RNA polymerase primary sigma factor
Organism
tph
Treponema pallidum subsp. pallidum Chicago
Pathway
tph02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
tph00001
]
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
TPChic_0493
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
tph03021
]
TPChic_0493
Transcription machinery [BR:
tph03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
TPChic_0493
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_r3
Sigma70_r2
Sigma70_r4
Sigma70_r1_2
Sigma70_r1_1
Exonuc_VII_L
Terminase_4
SYF2
DUF7211
Sigma70_r4_2
Motif
Other DBs
NCBI-ProteinID:
ADD72606
LinkDB
All DBs
Position
529129..530961
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AA seq
610 aa
AA seq
DB search
MELSRTPAVMRLLEYAREKKAITHDEVENILAHYGVETEELLHDVLDMLEQENIKVFSSE
EEELEDEVFAGLKGPAADDGDGSFPLSTERVRDKLCDSSRGARQNLLSNARNIALDDPVK
LYLRDIGQEKLLTAEQEVMLSKRMEEGEGIIKDIITQSGLLLPEFYHIGRSLSKKALAVL
DPAESGRTRKEISEEMADRRRLKQAYGEVLRSLYPEMRHYMAMKKRLDERGEPVTVLSSD
EEVCKQRDKLLSCLQKVDLQLEEIDRFSRKFLDTARKIREYKRRKDRHEKQLMIADLCDM
RKIGRGLAVPRQRAKLEETLGMSADCIQEIYTQIQKVTRRLRRIEYDFENTIDGILSMAR
AIHRGHVMLKKAKDKLINANLRLVVSIAKKYTNRGLLFFDLVQEGNIGLIKAVEKFEYRK
GYKFSTYATWWIRQAITRSISDQARTIRVPVHMIEQINKVTRESRQLLQKFGREPSDEEI
AQQLCWTVEKVKQVKSVAREPISLETPIGEEEDSSLGDFVPDADVENPSRVTERVLLKEE
VRSILSALPAREHEVLRMRFGLDGDYSQTLEEVGLYFDVTRERIRQIEAKALKRLRHPRH
SRRLKDFLDS
NT seq
1833 nt
NT seq
+upstream
nt +downstream
nt
atggagctgtcacgtactcctgcggtgatgcgcctgttagaatatgcgagggagaagaag
gctataacgcatgatgaggtcgagaacatactcgcgcactatggcgttgagacagaagag
ctgctacatgatgtgcttgatatgcttgagcaggagaatataaaggtcttctcctctgaa
gaggaggagctagaagacgaagtctttgcagggctgaaaggacctgccgcggacgatggc
gatgggtcgttccccctttcaactgagcgcgtgcgtgataagctgtgcgacagtagccgt
ggggcacggcagaacttgctgtcaaacgcgcggaatattgcacttgacgatccggtgaaa
ctctatctgcgtgatatcggccaagaaaagttgctcactgcggagcaagaggtcatgctt
tcaaagcggatggaagagggcgaaggcatcataaaggacattattacccagtctgggctc
cttcttcctgagttttatcacattgggcgcagtctttctaaaaaagctcttgcggttttg
gatcctgcagaaagcggacgtacgagaaaggaaatcagcgaggagatggccgatcgccgg
cgtctgaaacaggcatacggagaggtgcttcgctccttgtatcctgaaatgcgtcattac
atggcaatgaaaaagcggctggatgagcgtggggagccggtgacggttttgagtagtgat
gaagaagtgtgtaagcagcgcgacaagttgctttcctgtttacaaaaggtggacttgcaa
ttagaggagatagatcgcttttctcgaaaatttttggacaccgcgcgaaaaatacgggaa
tacaagcggcgtaaagatcgccacgaaaagcaacttatgattgctgacctgtgtgacatg
cgcaagattgggcgtggtctggccgtgccccgtcagcgtgcaaagttggaagagacgctt
ggtatgtctgcagattgtattcaagagatctatacacagattcaaaaagtgacacgcagg
ctgcgacgcatcgagtatgactttgaaaataccatcgacggtattttatccatggcgcgg
gcaattcaccggggtcatgtcatgctcaagaaggcaaaggataagctcattaatgctaat
ctgcgtttagttgtgtcgattgcaaagaagtacacaaaccgtggattgcttttttttgat
ctcgtgcaagagggcaatattgggctgattaaggcggtagaaaagtttgaatatcgcaag
ggatataaattttccacgtatgcgacgtggtggattcgccaggcaattacccgttctatt
tccgatcaggcgcgcaccattcgggttccggtacacatgatagagcagataaataaagtg
acgcgtgagtctcggcagttgttgcaaaagtttgggcgtgagccttctgatgaagaaatt
gcgcagcagctctgttggacagttgaaaaagttaagcaggtaaaaagtgttgcgcgcgag
cctatctctcttgaaactccaattggagaggaggaggactcttccttgggtgactttgtc
cctgacgctgacgtggaaaatccctctcgagttacagaaagagtcttgcttaaagaggaa
gtgcgatctatcctctccgctcttcctgcgagggagcacgaagttttgagaatgcgtttt
ggtctcgatggagactactctcaaacgttggaagaggtcggtttgtactttgatgtgacg
cgtgagcgtattcggcagatagaggcgaaggcccttaagcgtttgcgtcatccacgacac
agcagaagattgaaggatttccttgacagttag
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