Treponema pallidum subsp. pallidum Chicago: TPChic_0627
Help
Entry
TPChic_0627 CDS
T01868
Name
(GenBank) nuclease sbcCD subunit C
KO
K03546
DNA repair protein SbcC/Rad50
Organism
tph
Treponema pallidum subsp. pallidum Chicago
Brite
KEGG Orthology (KO) [BR:
tph00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
tph03400
]
TPChic_0627
DNA repair and recombination proteins [BR:
tph03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
TPChic_0627
Archaeal homologous recombinant proteins
TPChic_0627
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA_23
AAA_29
SbcC_Walker_B
SMC_N
AAA_27
TMP_4
AAA_21
nSTAND3
ABC_tran
AAA_16
AAA_22
Motif
Other DBs
NCBI-ProteinID:
ADD72732
LinkDB
All DBs
Position
683419..686562
Genome browser
AA seq
1047 aa
AA seq
DB search
MKPMRLTLHNIGPFVGTHTVDFTALGPIFLVCGKTGSGKTTLFDAIAYALYGKPLGTRAE
VIRSLRSHYAAPSEAAFATLEFSLGTKIYRVHRTLTCTLSHRKTEQPEQLYLEQKKGHGW
ERIACAHKSETECVIHDLLKLNSKEFERVVMLPQGECAQFLKANSKEKKETLMNLFPVDQ
YTALMERAKKKSLHAKAVLETLRSQLETLCAECMPDTYHERKQTLEAELQHARDALQQTR
ISHAYYTQKREALEAQLKKQQLCKELRARIETYRAQEPVHAETQKRIDRARKAAPLAAHI
KHVTQCEQDAQRIHAEIQEKMRSREQLLMKRAAHVAQQSSIEEQRRLLQTLHSACIHIED
AHDVATSIRDISCQAHTLTQHIHTLAQQKTTLTQQEQSLCKELDILQREAGTIDTRTSAF
NDLQIQLAHAKKTQELSQRYAELCAAHATCTAQCEKLEKIHAQKSAYSTRAREQLLQTKE
QIHLQETRTHAVVLARLLEHQEPCPVCGSCIHPNPARQDIDNLEPLTRRMQRIEQTYAQL
ETSEKDVYHILTSERERRASYSAQMQEIQHSFSILTSCDTRSSCDIPNVQKITVRVLDLT
EKLSRAKDMLACAQHALLRKKQPEQDLQDVRAHLQQCSQELAKKETALHALQETLTQQRV
RIHALSIRLPKELLASNLLAPQKMQHEKESVAYWKEMLAHCQTLMRELHTHIEEYDREFN
EIENASSALGADIAAREDALNHVQKEYMHLARTVCCARTEAHFNNNEEVTAALMTDAELS
HAAAEIQFFNELRAADTHLLKTLEAEIGTEIPSDLDELNAQCHTLVKDEENFLSRIEILS
ATLHTLTHQYLKYEECSKQLAQKTQESAKLITLSDELNGINQKKIQFDAWALISFLHEIT
AYANIRLQKMSEGRYHLRVADSHVNARGYQGLALLVADAYTGSVRPSATLSGGETFMASI
SLALGLADSIQTRSGGIVLDSLFIDEGFGSLDEASLDKAIGILDEIREGSRMIGIISHVH
ELRTRIPHKILIKKTNAGSHVMQGDAE
NT seq
3144 nt
NT seq
+upstream
nt +downstream
nt
gtgaagccgatgcgtcttacgctccacaacatcggtcctttcgttggcacccatacagtt
gacttcaccgcgctcggtcctatttttctagtgtgtgggaaaacaggttcaggaaaaacc
actctattcgatgcgatcgcctatgccctgtatgggaaaccccttggaacccgtgcagaa
gttatccgcagtctgcgcagtcattacgccgcaccatcagaagctgcatttgctacgctg
gaattttcactcggcactaaaatctaccgggtacaccggacgctgacttgcacactttcc
cacagaaaaacagagcaacccgagcagctgtatcttgagcaaaaaaaaggtcatggatgg
gagcgtattgcttgtgcgcataaaagtgaaactgaatgtgttattcacgatcttctcaaa
ctcaatagcaaagaatttgagcgcgtggttatgctcccacagggagaatgtgcgcaattt
ttaaaagcaaattcaaaagaaaaaaaagaaacgctgatgaatctatttcctgttgatcaa
tatactgctcttatggagcgagcaaaaaaaaaatcgctccatgccaaagcagtgcttgaa
acgctgcgttcgcaacttgaaactctatgtgcggagtgcatgcccgacacataccacgaa
aggaaacaaacgctagaagctgagttacagcacgcacgtgacgcactgcagcaaacccgc
atctcccatgcgtactatacacaaaaacgtgaagcgctcgaagcacagctaaaaaaacaa
caactttgtaaagagctgcgtgcgcgtatagaaacataccgcgcgcaagaaccagtccac
gcggaaactcaaaagcgtattgatcgcgcgcgaaaagcggcaccacttgctgcgcacata
aaacacgtcacccagtgcgaacaagatgcacagcgcattcatgcagaaatacaggaaaag
atgcgttcacgcgaacaattgctcatgaaacgagctgcgcatgtcgcgcagcagtcatcc
attgaagaacaacgccgtctactacaaacacttcatagtgcgtgcattcacattgaagac
gcgcatgacgttgccacgtcgatacgcgacatatcttgtcaggcgcacacactcacgcag
catatccacacgcttgcacaacaaaaaacaacacttacccagcaagaacaatcgttgtgt
aaagaactggatatactgcaaagagaagcgggtactatcgatactcgtacatctgccttt
aatgatttacaaattcaactcgcgcatgcaaagaagacacaagaattgtctcagcgatat
gccgagctctgtgcggctcacgcaacatgcactgcacaatgtgaaaaacttgagaaaata
cacgcacaaaaaagcgcgtatagcacacgggcacgtgagcagctccttcagacaaaagaa
caaattcatctccaagaaacccggacacacgcggtagtactcgcgcgtctcttagagcat
caagaaccgtgtcctgtctgcggctcttgcattcatccgaatcccgcacgtcaagacata
gataatcttgaaccgttaacccggcgcatgcaacgcatagaacaaacatacgcgcagctg
gaaaccagcgagaaagatgtgtaccacatcctcacctctgagcgtgagcgacgtgcatcc
tacagtgcacaaatgcaggaaatacagcattcattttccattcttacatcgtgtgatacg
cgatcatcctgcgatattccaaacgtgcaaaaaattaccgtacgtgttttggatctcacg
gaaaaattatctcgtgcaaaagatatgctcgcatgcgcgcaacacgctttactgagaaaa
aaacagcctgagcaggatttacaggatgtacgcgcacacctgcagcaatgctcacaagag
ctcgcaaaaaaagaaacagcactccacgcattgcaagaaacgcttacacagcagcgcgta
cgcattcacgcactgtccatacgtttacccaaggaattgcttgcatcgaacctacttgct
ccgcaaaagatgcagcatgagaaggagagtgtcgcctattggaaagagatgctcgcacac
tgtcaaacccttatgcgagaattgcacacccatattgaagaatacgaccgagagttcaat
gagatagaaaacgcttctagtgcgcttggcgccgacattgcagcgcgagaagatgcactg
aaccatgttcaaaaagaatacatgcaccttgcacgtaccgtgtgttgcgcacgaacagaa
gcgcatttcaataacaacgaagaagtaaccgccgctcttatgactgatgctgaactttct
catgctgcagcagaaattcaatttttcaatgaattgcgtgcggctgacacccatctactg
aaaacactcgaggcagaaataggaacagaaattccatccgatcttgatgaactgaatgcg
caatgtcatacgttggtaaaagatgaggaaaactttctctctcgtattgaaatactgtct
gccacgctacacacactcacacatcagtatcttaaatacgaagagtgttcaaaacagctt
gcacaaaagacgcaagaaagcgcaaagcttataactctttcagatgaactgaatgggata
aaccaaaaaaaaatacaatttgacgcatgggcactcatttcttttctgcacgaaattact
gcctacgcaaacatacgtttgcaaaaaatgagtgaaggacgttaccatctgagggtagct
gactcgcacgtcaatgcacgaggatatcaaggacttgcgctgctcgttgcagatgcgtac
actgggagcgtgcgcccttcggcaacactttcaggaggcgaaacctttatggcctctatc
agtcttgcacttggtcttgcagattctatccaaacccgatcgggaggtattgtgcttgac
tcgctgttcatagatgaaggatttggaagtttggatgaggcaagtttagataaggcaatt
ggcatcttagatgaaatcagagagggaagtcgcatgataggcatcatttctcatgttcat
gaattgcgcacgcgcatccctcacaaaattctgataaaaaaaacaaacgcaggatcacac
gtaatgcagggggatgcagaatga
DBGET
integrated database retrieval system
