Treponema pallidum subsp. pallidum Chicago: TPChic_0770
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Entry
TPChic_0770 CDS
T01868
Name
(GenBank) dead-box ATP-dependent rna helicase ydbr
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
tph
Treponema pallidum subsp. pallidum Chicago
Pathway
tph03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
tph00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
TPChic_0770
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tph03019
]
TPChic_0770
03009 Ribosome biogenesis [BR:
tph03009
]
TPChic_0770
Enzymes [BR:
tph01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
TPChic_0770
Messenger RNA biogenesis [BR:
tph03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
TPChic_0770
Ribosome biogenesis [BR:
tph03009
]
Prokaryotic type
rRNA helicases
TPChic_0770
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
DbpA
Cas3-like_C_2
CMS1
ERCC3_RAD25_C
Motif
Other DBs
NCBI-ProteinID:
ADD72866
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All DBs
Position
837245..839179
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AA seq
644 aa
AA seq
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MGAHRERAPRALERYGVQRSLCVFVSTRKFHFLLHFPSMDVSFEELGLNEQSLAAVRLKG
FRCPTPIQAAAIPRLLAGDANIIAKARTGTGKTAAFGLPLIQELGSPCEHPGALVLVPTR
ELAAQVASELSSLRIQKIPRIHTVYGGVSIAEQLRNLEQGGEIIVGTTGRVIDHIERGSL
ELSYLRYFILDEADEMLNMGFVEDIESIFSHANKDARVLMFSATMPRQILSIASTFMGSY
EVVEEVTPEEARPLIEQFMWVVRDADKIEALVRLIDVSDNFYGLVFCQTKADADTVAKSL
DERHYHVAALHGDIPQSQREKILERFRTKRARILVATDVAARGIDIEGITHVVNYSIPHD
SATYTHRVGRTGRAGSQGIAISFVRPHETRRMEYLSKHCNGELKASTVPLVEHILTQKEG
RIFSSLKTHLCQLLSEGVHGTFTRFAQRLLQEDLKARVAEALGTSADVPQEPNVSLVAAL
LQIHYGTALDPRQYRDIKTITPETARARPHDAEKAYVRIEYGKKSYLTRKRVVQFICALV
KIPGHLVDRVDITERCAFARIPRRAAEEAVRLSKKRKDLPRVSFVGHASRLRNTATPAEK
STYPRRLPSGEGLREQISRRTSSSKKASGKPEDSLPPPQEHRLD
NT seq
1935 nt
NT seq
+upstream
nt +downstream
nt
ttgggagcccatagagaaagagctcccagagcgctggaacgctacggtgtccagcgctct
ttgtgtgtttttgtctctacaagaaagttccactttttgctacacttcccttctatggac
gtgtcctttgaagagcttggtttgaatgaacaatcgcttgcagcggtgcgactcaagggg
tttcggtgcccaactcccatccaggctgctgccattccccgactgttggcaggggatgcg
aatatcatcgcaaaagcccgaaccgggactggaaaaacggccgccttcggcctccccctt
atccaagaactgggaagcccgtgcgaacacccaggggccttagtgcttgttcctacaagg
gagctcgctgcgcaggtcgcaagcgaactgagctccctgaggatacaaaaaatacctcgg
attcacaccgtgtacggtggggtctccatcgcggagcagctgcgtaatctcgaacagggt
ggagagataatagtaggaacgaccgggcgcgtcatcgatcatattgagcgcggttctctc
gagctgtcttatctgcgctacttcatattagacgaagcggatgagatgctaaacatgggt
ttcgttgaggatatagagtctatcttctctcatgcaaataaagacgcacgcgtccttatg
ttttctgccactatgcccaggcagatcctttctattgcctctaccttcatgggaagctac
gaggttgttgaagaagtcactccagaagaggcgcgcccgctcattgaacaatttatgtgg
gttgtaagggacgctgacaaaatcgaggcgcttgtgcgccttattgatgtgagcgacaac
ttttacggtctggtgttctgtcaaaccaaggcggacgccgacactgttgcgaaatctcta
gacgaacgccattaccatgttgctgcacttcacggagatattccgcaaagccagcgagaa
aaaattctcgagcgctttcgtacaaaacgagcgcgtatcctcgtcgccactgatgttgcc
gctcgcggcattgacatcgaaggaattacgcacgtggtgaactactccattcctcatgat
agcgctacttacacgcaccgcgtcggcagaactggacgcgcaggatcacagggtatcgct
atcagttttgtacgcccacacgagacacgacggatggagtatctgagtaaacactgtaat
ggcgaattgaaagctagtacggtacctttggtggagcacatccttactcaaaaggagggg
cgtattttctcgtccctcaagactcatctttgccaattactctctgaaggggtgcacgga
acctttacccgttttgcgcagcggctgctccaagaagaccttaaagctcgcgtggcagaa
gccctgggtacttccgccgacgttcctcaggaaccgaacgtgtcgcttgtcgccgcgctc
ctgcaaatccactacggtactgcgctggaccccaggcagtaccgggatattaaaacgatt
acgccagagacggcccgcgcacgtccccatgacgcggaaaaggcgtatgtgcgcattgag
tacggaaaaaaaagctacctcactcggaaacgtgttgtgcagttcatctgtgccctggta
aaaatccccggtcatcttgtagatcgcgttgacataaccgaacgttgcgcgtttgcgcgc
ataccccgacgcgcagcggaggaagcagttcgcttatccaagaagcgcaaggacctgccg
cgcgtttccttcgttgggcacgccagtcgcctaagaaataccgctacccctgcagaaaag
tctacctatccaaggcgcctcccttccggagaaggcctaagggagcagatctcaaggaga
acctcttcctctaagaaggcttctgggaaaccggaggattctcttccccctccccaagaa
catcgccttgattga
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